Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CKA81_RS05165 Genome accession   NZ_CP022987
Coordinates   1068166..1069683 (+) Length   505 a.a.
NCBI ID   WP_128354337.1    Uniprot ID   A0A410GAP6
Organism   Pollutimonas thiosulfatoxidans strain YE3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1063166..1074683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKA81_RS05140 (CKA81_05150) ptsP 1063360..1065051 (+) 1692 WP_180015577.1 phosphoenolpyruvate--protein phosphotransferase -
  CKA81_RS05145 (CKA81_05155) - 1065048..1066274 (-) 1227 WP_128354333.1 ammonium transporter -
  CKA81_RS05150 (CKA81_05160) - 1066370..1066708 (-) 339 WP_128354334.1 P-II family nitrogen regulator -
  CKA81_RS05155 - 1067161..1067676 (+) 516 WP_128354335.1 hypothetical protein -
  CKA81_RS05160 (CKA81_05170) - 1067776..1068054 (+) 279 WP_128354336.1 accessory factor UbiK family protein -
  CKA81_RS05165 (CKA81_05175) comM 1068166..1069683 (+) 1518 WP_128354337.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CKA81_RS05170 (CKA81_05180) rpmI 1069903..1070100 (+) 198 WP_128354338.1 50S ribosomal protein L35 -
  CKA81_RS05175 (CKA81_05185) rplT 1070117..1070476 (+) 360 WP_128354339.1 50S ribosomal protein L20 -
  CKA81_RS05180 (CKA81_05190) pheS 1070547..1071569 (+) 1023 WP_128354340.1 phenylalanine--tRNA ligase subunit alpha -
  CKA81_RS05185 (CKA81_05195) pheT 1071603..1074014 (+) 2412 WP_128354341.1 phenylalanine--tRNA ligase subunit beta -
  CKA81_RS05190 (CKA81_05200) - 1074029..1074349 (+) 321 WP_180015148.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53719.02 Da        Isoelectric Point: 8.5149

>NTDB_id=243871 CKA81_RS05165 WP_128354337.1 1068166..1069683(+) (comM) [Pollutimonas thiosulfatoxidans strain YE3]
MSLAVLASRALCGLQAFAVRVEVHVGPGLPAFHVVGLPDTGVRESRERVRSAIISSGFDFPAGRITVNLAPADLPKESGR
FDLPIALGVLLASGQVPAADSAGAAPDLRRYVFAGELSLTGAIVAVGAPLAIALAVARSDPDAILVLPPGCADTAANVPG
LTVLAAATLVETVEHFCGSSVLQQAQGRHCAGPSPTPLLCLADVRGQPLARRALEIAAAGAHSLLMSGSPGTGKSMLAHR
LPGLLPRLTVDHALEVAALASLNGTDQGYSDLPPFRAPHHSASLPALVGGGARPRPGEISLAHRGVLFLDELPHFQRNVL
ESLREPLETGSVSIARASRTLTFPARFQLVAAMNPCACGWLGHASMRCRCLPDQVDKYRNRLSGPLLDRIDLQIALPTTQ
VDWMDEAAGESSGVVRSRVAQCRERQLRRQGCCNAMLRIDDIERHCVLDRDAAALLRQAMLRWHWSARVGHRVLRVARTL
ADLCAQRQIRGVHIAEAIQYRQPWG

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=243871 CKA81_RS05165 WP_128354337.1 1068166..1069683(+) (comM) [Pollutimonas thiosulfatoxidans strain YE3]
ATGTCGTTAGCCGTATTGGCCAGCCGGGCGCTCTGCGGCCTACAGGCTTTCGCTGTTCGGGTGGAAGTCCACGTGGGACC
GGGCCTGCCGGCCTTCCATGTGGTCGGCTTGCCCGATACCGGCGTGCGCGAAAGCCGCGAACGCGTGCGCTCCGCGATCA
TCAGCAGTGGTTTTGACTTCCCGGCGGGGCGCATCACGGTCAATCTGGCGCCGGCAGACCTGCCCAAAGAGTCCGGTCGA
TTCGATCTACCGATAGCCTTAGGCGTACTGCTGGCCTCGGGCCAGGTGCCTGCCGCCGACTCCGCTGGTGCTGCGCCCGA
CCTACGCCGCTATGTGTTTGCCGGCGAACTCTCTCTTACCGGAGCCATCGTCGCCGTGGGCGCGCCGCTGGCCATTGCGC
TGGCCGTGGCGCGCAGCGATCCGGACGCCATCCTGGTTCTGCCGCCGGGCTGTGCGGATACGGCGGCAAATGTGCCTGGG
CTGACTGTACTGGCGGCTGCCACCCTGGTTGAAACCGTAGAGCACTTCTGTGGCAGTTCGGTCTTGCAGCAAGCGCAGGG
GCGGCACTGTGCCGGGCCCAGTCCCACCCCCTTGTTGTGTCTGGCCGATGTGCGGGGTCAGCCGCTGGCGCGGCGTGCTC
TGGAGATCGCAGCTGCCGGTGCCCATAGCCTGCTGATGTCGGGCTCGCCGGGTACCGGCAAAAGCATGCTGGCGCATCGG
CTGCCGGGCTTACTTCCCAGGCTTACCGTCGACCATGCGCTCGAGGTGGCTGCTCTTGCCAGTTTGAACGGCACGGATCA
AGGCTATAGCGACCTGCCCCCTTTTCGCGCGCCGCACCATTCGGCTTCGCTGCCGGCGCTGGTGGGGGGTGGCGCCCGTC
CCCGGCCTGGCGAAATAAGCCTGGCGCACCGTGGTGTGCTTTTCCTGGATGAACTGCCTCATTTTCAACGCAACGTTCTG
GAATCGCTGCGCGAGCCGCTAGAGACCGGCAGCGTGTCCATCGCCCGGGCGTCGCGCACGCTGACTTTTCCTGCACGCTT
CCAACTGGTTGCCGCGATGAATCCCTGCGCTTGCGGCTGGCTCGGCCATGCCAGCATGCGCTGCCGCTGTTTGCCGGACC
AGGTAGATAAATACCGCAACAGGCTTTCCGGCCCCTTGCTGGATCGCATCGATCTGCAGATTGCGCTGCCAACCACGCAA
GTGGATTGGATGGACGAGGCAGCTGGAGAGAGCTCGGGGGTGGTGCGCAGCCGGGTGGCCCAGTGTCGTGAACGACAATT
ACGCCGTCAGGGCTGTTGCAATGCCATGTTGCGCATAGATGACATCGAACGGCACTGCGTGCTGGATCGGGACGCCGCTG
CCTTGCTGCGTCAGGCAATGCTGCGCTGGCACTGGTCGGCACGGGTGGGGCACCGGGTTTTGCGGGTGGCACGCACCCTG
GCAGATTTATGCGCCCAGCGCCAGATACGCGGCGTGCATATTGCCGAAGCGATACAATACCGCCAGCCTTGGGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410GAP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.606

100

0.499
  comM Vibrio campbellii strain DS40M4

47.741

100

0.481
  comM Haemophilus influenzae Rd KW20

47.047

100

0.473
  comM Glaesserella parasuis strain SC1401

45.776

100

0.461
  comM Legionella pneumophila str. Paris

44.336

100

0.45
  comM Legionella pneumophila strain ERS1305867

44.336

100

0.45
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.945

100

0.412

Multiple sequence alignment