Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NTHI_RS06075 Genome accession   NC_007146
Coordinates   1216967..1218496 (-) Length   509 a.a.
NCBI ID   WP_011272390.1    Uniprot ID   -
Organism   Haemophilus influenzae 86-028NP     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1211967..1223496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHI_RS06055 (NTHI1277) xylB 1213137..1214618 (+) 1482 WP_032826718.1 xylulokinase -
  NTHI_RS06060 (NTHI1278) rfaD 1214669..1215595 (-) 927 WP_005690709.1 ADP-glyceromanno-heptose 6-epimerase -
  NTHI_RS06065 (NTHI1279) - 1215648..1216151 (-) 504 WP_005686413.1 protein disulfide oxidoreductase -
  NTHI_RS06070 (NTHI1280) deoC 1216262..1216933 (+) 672 WP_005690707.1 deoxyribose-phosphate aldolase -
  NTHI_RS06075 (NTHI1282) comM 1216967..1218496 (-) 1530 WP_011272390.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NTHI_RS06080 (NTHI1283) yihA 1218611..1219228 (-) 618 WP_011272391.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NTHI_RS06085 (NTHI1285) - 1219333..1220199 (+) 867 WP_005670794.1 VirK/YbjX family protein -
  NTHI_RS06090 (NTHI1286) oppF 1220239..1221237 (-) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  NTHI_RS06095 (NTHI1287) - 1221234..1222205 (-) 972 WP_005647625.1 ABC transporter ATP-binding protein -
  NTHI_RS06100 (NTHI1288) oppC 1222215..1223150 (-) 936 WP_011272393.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55890.40 Da        Isoelectric Point: 9.8668

>NTDB_id=24385 NTHI_RS06075 WP_011272390.1 1216967..1218496(-) (comM) [Haemophilus influenzae 86-028NP]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGILP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGALFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSVQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=24385 NTHI_RS06075 WP_011272390.1 1216967..1218496(-) (comM) [Haemophilus influenzae 86-028NP]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATTGCTATCGGGATTTTAGCTGCATCAGATCAGCTTGATGCAAGCCGTTTAAAGCAATTTGAATTTGT
GGCAGAGCTTGCGCTGACGGGCCAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACGCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCCCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGGAAAACCATGTTAGCCAGCCGTTTGACAGGGATTTTACCT
GAAATGACAGATTTAGAAGCGATAGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
GCAACGTCCTTTTCGCGCACCACACCATAGTGCATCAATGCCGGCTTTAGTTGGTGGCGGAACGATCCCTAAACCTGGCG
AAATATCCTTAGCAACAAATGGGGCGCTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGC
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCCAATGCAAAAATTCAATTCCCAGCTCGTTTTCAATTAGTGGC
AGCGATGAATCCAAGCCCTACAGGCCATTATACTGGGACACATAACCGCACTTCACCACAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTGCAAAAT
ACGGGCGATCGTGGCGAAACCAGCGTGCAAGTTCGTGAAAAAGTGTTAAAAGTACGTGAGATTCAAATGGAAAGAGCGGG
GAAAATCAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTTGGGCTTTCTGTACGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

98.821

100

0.988
  comM Glaesserella parasuis strain SC1401

78.698

99.607

0.784
  comM Vibrio cholerae strain A1552

67.061

99.607

0.668
  comM Vibrio campbellii strain DS40M4

65.68

99.607

0.654
  comM Legionella pneumophila str. Paris

50.696

98.821

0.501
  comM Legionella pneumophila strain ERS1305867

50.696

98.821

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment