Detailed information NTG0024317

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PSYR_RS02095
• Genome accession: NC_007005
• Coordinates: 433624..434688 (+)
• Length: 354 a.a.
• NCBI ID: WP_003403040.1
• Uniprot ID: A0AAJ4E2D4
• Organism: Pseudomonas syringae pv. syringae B728a
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 428624..439688

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSYR_RS02080 (Psyr_0401)	-	429120..430388 (+)	1269	WP_011266374.1	malic enzyme-like NAD(P)-binding protein	-
PSYR_RS27000	-	430622..430747 (+)	126	Protein_397	IS110 family transposase	-
PSYR_RS02090 (Psyr_0402)	-	430973..433417 (-)	2445	WP_011266375.1	penicillin-binding protein 1A	-
PSYR_RS02095 (Psyr_0403)	comM	433624..434688 (+)	1065	WP_003403040.1	pilus assembly protein PilM	Machinery gene
PSYR_RS02100 (Psyr_0404)	-	434688..435263 (+)	576	WP_003403038.1	PilN domain-containing protein	-
PSYR_RS02105 (Psyr_0405)	pilO	435260..435883 (+)	624	WP_003403037.1	type 4a pilus biogenesis protein PilO	-
PSYR_RS02110 (Psyr_0406)	pilP	435880..436407 (+)	528	WP_011266376.1	type 4a pilus biogenesis lipoprotein PilP	-
PSYR_RS02115 (Psyr_0407)	pilQ	436455..438560 (+)	2106	WP_164920435.1	type IV pilus secretin PilQ	Machinery gene
PSYR_RS02120 (Psyr_0408)	aroK	438565..439083 (+)	519	WP_011266378.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 38093.54 Da
• Isoelectric Point: 4.7049

>NTDB_id=24317 PSYR_RS02095 WP_003403040.1 433624..434688(+) (comM) [Pseudomonas syringae pv. syringae B728a]
MFELFSKKANTLLGIDISSTSVKLLELSRSGTRYKVESYAVEPLPANAVVEKNIAELEGVGQALSRVLAKAKTSVKNVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKLEADQYIPYPLEEVAIDFEVQGYSVRNPERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLAAQLGNGHDELTVAVVDIGATMTTLSVLHHGRIIYTREQLFGGRQLTDEIQRRYGLSM
EEAGLAKKQGGLPDDYVSEVLDPFKEALVQQVSRSLQFFFAAGQYNSVDHIMLAGGTASISGLEHLIQRRIGTPTMVANP
FADMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=24317 PSYR_RS02095 WP_003403040.1 433624..434688(+) (comM) [Pseudomonas syringae pv. syringae B728a]
GTGTTCGAACTCTTCAGTAAGAAGGCCAACACCCTTCTAGGGATCGATATTAGCTCCACCTCGGTAAAACTCCTGGAATT
GAGTCGTTCCGGCACCCGTTACAAGGTCGAGTCTTACGCAGTAGAGCCGTTGCCGGCCAACGCTGTCGTCGAAAAGAACA
TTGCCGAACTCGAAGGGGTCGGGCAGGCGTTGTCTCGCGTGCTCGCCAAGGCCAAGACCAGCGTCAAGAACGTGGCGGTT
GCCGTGGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGTCTTTCCGACGATGACATGGAAAACCAGCT
CAAGCTTGAAGCTGACCAGTACATCCCCTATCCGCTGGAAGAAGTCGCTATCGATTTCGAAGTGCAGGGCTATTCGGTGC
GCAATCCCGAGCGCGTCGAGGTGTTGCTGGCTGCTTGCCGCAAGGAGAACGTCGAAGTGCGCGAGGCCGCCCTGGCGCTG
GCCGGGCTGACCGCGCGCGTGGTCGATGTCGAGGCCTACGCGCTTGAGCGCTCGTTCGGACTGCTGGCCGCGCAACTGGG
CAACGGTCATGACGAGCTGACGGTGGCCGTGGTCGATATCGGCGCCACCATGACCACCCTGAGCGTGCTGCATCATGGCC
GGATCATTTATACCCGCGAGCAGCTGTTTGGCGGGCGCCAGCTGACTGACGAAATTCAGCGCCGCTACGGGCTCTCCATG
GAGGAAGCCGGGCTTGCCAAGAAGCAGGGCGGCTTGCCCGACGACTACGTCAGCGAGGTGCTCGACCCCTTCAAGGAAGC
GCTGGTGCAGCAGGTTTCCCGCTCCCTGCAGTTCTTCTTTGCGGCCGGTCAATACAACTCCGTGGATCACATCATGCTGG
CAGGCGGCACGGCTTCGATTTCAGGGCTGGAGCATCTGATCCAGCGGCGCATCGGCACTCCGACCATGGTCGCCAACCCG
TTTGCCGACATGGCCCTGAGTTCCAAGGTCAATGCCGGCGCCCTGGCCAGTGATGCGCCGGCGCTGATGATCGCGTGTGG
CCTGGCGTTGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	56.215	100	0.562
pilM	Acinetobacter baumannii D1279779	55.932	100	0.559
comM	Acinetobacter baylyi ADP1	54.237	100	0.542
pilM	Legionella pneumophila strain ERS1305867	46.761	100	0.469