Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSYR_RS01010 Genome accession   NC_007005
Coordinates   210345..211838 (+) Length   497 a.a.
NCBI ID   WP_003413980.1    Uniprot ID   A0AAJ4AXW6
Organism   Pseudomonas syringae pv. syringae B728a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 205345..216838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYR_RS01000 (Psyr_0195) - 205820..206563 (-) 744 WP_011266250.1 hypothetical protein -
  PSYR_RS01005 (Psyr_0196) - 206567..209947 (-) 3381 WP_011266251.1 toxin VasX -
  PSYR_RS01010 (Psyr_0197) comM 210345..211838 (+) 1494 WP_003413980.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSYR_RS01015 (Psyr_0198) - 211908..213215 (-) 1308 WP_003313973.1 CitMHS family transporter -
  PSYR_RS01020 (Psyr_0199) - 213512..213913 (+) 402 WP_011266252.1 GFA family protein -
  PSYR_RS01025 (Psyr_0200) - 213976..215373 (-) 1398 WP_011266253.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53026.80 Da        Isoelectric Point: 7.3250

>NTDB_id=24313 PSYR_RS01010 WP_003413980.1 210345..211838(+) (comM) [Pseudomonas syringae pv. syringae B728a]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVSHL
LELVAHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQVPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAEARDRQQRRQGCANAFLDLPGLREYCALSSVDESWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
INRSHLAEALQYRPSTN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=24313 PSYR_RS01010 WP_003413980.1 210345..211838(+) (comM) [Pseudomonas syringae pv. syringae B728a]
ATGTCGCTGGCTATCGTCCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCGGCGGTTACTGTTGAAGCGCACCTGGCCAA
CGGCCTGCCGGCCCTGACGCTGGTGGGGTTGCCGGAGGGGGCGGTCAAGGAGAGCAAGGACCGGGTGCGCAGTGCCATTC
TCAATTCCGGGCTGGATTTTCCGGCGCGGCGTATCACGCTCAATCTTGCGCCGGCTGATTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGTTTGCTGGCCGCCAGCGGGCAGGTGCCGCTGGTGGCGTTGCAGGATGTTGAGTGTCT
GGGCGAGTTGGCGTTGTCGGGGGCGATTCGGCCGATTCAGGGTGTGCTGCCTGCTGCGCTGGCGGCGCGTGCGGCGGAGC
GGACGCTGATCATTCCGGCGGTAAACGCCGAGGAAGCCTGCCTGGCGTCGGGGCTGCGGGTGATTGCGGTGAGTCACTTG
CTGGAGCTGGTCGCGCATTTCAACGGGCGCACGGTGATTGCGCCGTATCAATCCAGTGGTCTGTTGCATCAGCCCAAGCC
GTATCCGGACCTTAGCGAAGTGCAGGGCCAGACCGCCGCGAAGCGTGCCTTGGTGATTGCCGCTGCGGGGGCGCATAACC
TGCTGTTCAGCGGGCCGCCCGGCACCGGCAAGACGCTGCTCGCCAGTCGCCTGCCGGGTTTGTTGCCACCGCTGGACGAG
CACGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTCGCCAGTCAGGTGCCGCTGACCAGTTGGCCGCAGCGGCCGTTTCG
GCAGCCGCATCACTCGGCGTCCGGGCCTGCGTTGGTGGGTGGTGGCAGTCGTCCGCAACCTGGCGAGATCACGTTGGCGC
ATCACGGCGTTTTATTCCTGGACGAGCTGCCGGAGTTTGATCGCCGCGTGCTGGAGGTTTTACGTGAGCCGCTGGAGTCC
GGGCATATCGTGATTTCCCGGGCGCGGGATCGCGTGCGCTTTCCGGCGCGGTTCCAGTTGGTGGCGGCGATGAACCCGTG
TCCCTGTGGCTATCTTGGCGAGCCGACCGGGCGCTGCCGTTGTTCCACCGAGCAGGTGCAGCGCTATCGCAACAAGTTGT
CCGGCCCGCTGCTGGACCGGATCGACCTGCACCTGACCGTCGCCCGCGAAGCCACCGCCCTCAACCCTGACCCGACCACC
AGTGAAAACACTGCCAGTGCCGCAGCCGTGGTCGCTGAGGCGAGAGACCGTCAGCAACGTCGTCAGGGCTGTGCCAATGC
GTTTCTCGATCTGCCGGGGCTGCGCGAGTACTGCGCGCTGTCCAGTGTCGATGAAAGCTGGCTGGAGACGGCGTGCGAGC
GTCTGACCCTGTCGTTACGCTCGGCGCATCGGTTGCTGAAGGTGGCGCGAACCCTGGCGGATCTGGAGCAGGTGGACGCG
ATCAACCGCAGCCATCTGGCCGAGGCCTTGCAGTATCGGCCTTCAACCAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53.8

100

0.541
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Haemophilus influenzae Rd KW20

53

100

0.533
  comM Legionella pneumophila str. Paris

48.713

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.713

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459

Multiple sequence alignment