Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VF_RS13390 Genome accession   NC_006840
Coordinates   2875692..2877218 (-) Length   508 a.a.
NCBI ID   WP_011262893.1    Uniprot ID   Q5E1P6
Organism   Aliivibrio fischeri ES114     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2870692..2882218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS19670 (VF_2662) - 2870790..2870957 (+) 168 WP_011262888.1 hypothetical protein -
  VF_RS13365 (VF2550) - 2871108..2871371 (+) 264 WP_005421548.1 YihD family protein -
  VF_RS13370 (VF2551) ccoG 2871583..2873001 (+) 1419 WP_011262889.1 cytochrome c oxidase accessory protein CcoG -
  VF_RS13375 (VF2552) - 2873058..2874041 (+) 984 WP_005421552.1 serine/threonine protein kinase -
  VF_RS13380 (VF2553) - 2874085..2874684 (+) 600 WP_193332962.1 thiol:disulfide interchange protein DsbA/DsbL -
  VF_RS13385 (VF2554) - 2874729..2875592 (-) 864 WP_053044381.1 acyltransferase -
  VF_RS13390 (VF2555) comM 2875692..2877218 (-) 1527 WP_011262893.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VF_RS13395 (VF2556) ilvG 2877626..2879272 (+) 1647 WP_047863542.1 acetolactate synthase 2 catalytic subunit -
  VF_RS13400 (VF2557) ilvM 2879272..2879517 (+) 246 WP_005421570.1 acetolactate synthase 2 small subunit -
  VF_RS13405 (VF2558) - 2879530..2880477 (+) 948 WP_011262896.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55121.24 Da        Isoelectric Point: 7.0374

>NTDB_id=24273 VF_RS13390 WP_011262893.1 2875692..2877218(-) (comM) [Aliivibrio fischeri ES114]
MGLAIIHSRACVGVEAPPVTVEVHISNGMPGFSLVGLPETTVKEAKDRVRSAIINANFEFPSKKITVNLAPADLPKEGGR
FDLPIALGILAASDQIPENKLDGHEFVGELALSGELRRVKGVLPAALASLNAKRCLIVPDDNGDQAALVGKDIHKSAPHL
LAVCGFLCGQQQLSLLTTPQLEEQSLSLERDLQDIIGQQQGKRALEIAAAGGHNLLYLGPPGTGKTMLASRMSDLLPEMT
NDEALETAAVASLTHQNITESNWRARPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLREPL
ESGEIVISRAASKTRFPARFQLVGALNPSPTGYYEGNQTRTNPQLILRYLNRISGPLLDRFDMSLEIPLLPKGTLTEGGD
RGESTQAVKHRVLQARARMLERNGKVNALLGSREIEKHCPLDKEDAAFLENTLHQLGLSIRAYHRIIKVARTIADLSAEE
NIQRIHLAEAVGYRAMDRLLKQLSAQAV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=24273 VF_RS13390 WP_011262893.1 2875692..2877218(-) (comM) [Aliivibrio fischeri ES114]
ATGGGATTAGCAATAATACACAGTCGAGCTTGTGTAGGTGTAGAAGCACCACCGGTGACGGTTGAAGTTCATATTAGTAA
TGGGATGCCAGGATTTAGTCTGGTTGGCTTACCAGAAACAACAGTAAAAGAAGCAAAAGACAGAGTAAGAAGTGCAATCA
TTAATGCCAACTTTGAGTTTCCATCTAAAAAGATCACCGTTAATTTAGCTCCTGCGGATCTTCCAAAAGAAGGTGGAAGA
TTTGATCTTCCTATTGCTCTTGGGATCCTAGCAGCATCAGATCAAATACCTGAAAATAAATTGGATGGTCATGAATTTGT
TGGTGAGTTGGCTCTTTCTGGTGAGTTACGTCGAGTAAAAGGTGTTTTACCTGCCGCTTTAGCTTCACTTAATGCTAAAC
GCTGCTTAATTGTTCCTGATGATAATGGTGATCAGGCTGCGTTGGTTGGAAAGGATATTCATAAATCTGCGCCTCACCTA
CTAGCTGTGTGTGGTTTTTTGTGTGGGCAACAGCAACTCAGTTTATTAACTACTCCTCAGCTCGAAGAGCAATCCTTATC
TTTAGAGCGTGATTTACAAGATATTATTGGTCAACAGCAAGGTAAGCGAGCGTTAGAGATAGCAGCTGCTGGAGGACATA
ATTTATTGTACTTAGGCCCTCCAGGTACAGGTAAAACCATGCTCGCTTCCCGTATGAGTGATTTATTGCCAGAAATGACC
AATGATGAAGCGTTAGAAACGGCAGCGGTAGCCTCGTTGACTCATCAAAATATTACAGAGTCTAATTGGCGAGCCCGTCC
TTTTCGTTCACCTCATCATTCTAGCTCTATGGCAGCATTGGTGGGTGGTGGCTCTATCCCTCGACCGGGGGAAATATCAT
TAGCTCACAATGGTATTTTATTTTTAGATGAGATGCCGGAGTTTGAAAGAAAAGTGCTTGATTCACTGCGGGAACCACTA
GAATCTGGTGAGATAGTCATCTCACGCGCCGCGAGTAAAACACGTTTTCCTGCACGTTTTCAATTGGTCGGAGCATTAAA
TCCTAGCCCTACAGGTTATTATGAGGGGAACCAAACGCGAACCAATCCACAGTTGATTTTACGTTACCTTAATCGAATAT
CTGGACCTTTGTTAGATCGCTTTGATATGTCATTAGAAATACCGCTATTACCTAAAGGGACGCTCACAGAAGGTGGAGAT
AGAGGTGAAAGTACGCAAGCAGTAAAACATCGAGTTTTACAGGCTCGCGCTCGCATGTTAGAGCGTAATGGTAAAGTGAA
TGCATTATTAGGAAGTCGAGAAATTGAAAAGCATTGTCCACTAGACAAGGAAGATGCTGCATTTTTAGAAAATACGCTAC
ACCAGCTAGGGTTATCCATTCGGGCTTATCATCGAATTATCAAAGTGGCACGCACCATCGCTGATTTATCAGCTGAAGAA
AATATTCAACGAATCCACTTAGCTGAGGCAGTAGGTTATCGAGCTATGGATCGGTTGCTAAAACAATTATCTGCTCAAGC
AGTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E1P6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

79.568

100

0.797
  comM Vibrio campbellii strain DS40M4

79.528

100

0.795
  comM Haemophilus influenzae Rd KW20

63.78

100

0.638
  comM Glaesserella parasuis strain SC1401

62.941

100

0.632
  comM Legionella pneumophila str. Paris

50

98.031

0.49
  comM Legionella pneumophila strain ERS1305867

50

98.031

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.664

99.606

0.445

Multiple sequence alignment