Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VF_RS01765 Genome accession   NC_006840
Coordinates   384488..385021 (+) Length   177 a.a.
NCBI ID   WP_011261155.1    Uniprot ID   -
Organism   Aliivibrio fischeri ES114     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 379488..390021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS01750 (VF0350) - 380875..381462 (-) 588 WP_011261151.1 polysaccharide biosynthesis/export family protein -
  VF_RS01755 (VF0351) - 381463..382779 (-) 1317 WP_011261152.1 outer membrane beta-barrel protein -
  VF_RS01760 (VF0352) - 382763..384175 (-) 1413 WP_011261153.1 undecaprenyl-phosphate glucose phosphotransferase -
  VF_RS01765 (VF0353) ssb 384488..385021 (+) 534 WP_011261155.1 single-stranded DNA-binding protein Machinery gene
  VF_RS01770 (VF0354) - 385106..385795 (-) 690 WP_236727799.1 hypothetical protein -
  VF_RS01775 (VF0355) csrD 386002..387981 (+) 1980 WP_011261157.1 RNase E specificity factor CsrD -
  VF_RS01780 (VF0356) - 388101..389564 (+) 1464 WP_011261158.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19554.60 Da        Isoelectric Point: 4.9269

>NTDB_id=24241 VF_RS01765 WP_011261155.1 384488..385021(+) (ssb) [Aliivibrio fischeri ES114]
MASRGVNKVILVGNLGQDPEIRYMPSGGAVANITIATSETWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQNGQDRFTTEVVVQGFNGVMQMLGGRGQGAPAGGQQQQGNWGQPQQPAQQNNFAPQQQQAPQQQAPQAA
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=24241 VF_RS01765 WP_011261155.1 384488..385021(+) (ssb) [Aliivibrio fischeri ES114]
ATGGCCAGCCGTGGTGTAAATAAAGTTATCCTTGTTGGTAACTTAGGGCAAGATCCTGAAATCCGTTACATGCCAAGTGG
CGGTGCGGTAGCGAATATTACAATTGCAACGTCTGAAACTTGGCGTGATAAGGCAACTGGTGAGCAACGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAATTAGCAGAAGTTGCTGGTGAGTACTTACGTAAAGGCTCTCAAGTTTACGTT
GAGGGTCAATTACAAACTCGTAAATGGCAAGACCAGAATGGTCAAGACCGTTTTACAACAGAAGTAGTTGTTCAGGGCTT
TAACGGCGTAATGCAAATGCTTGGTGGTCGCGGACAAGGTGCTCCAGCTGGTGGTCAGCAACAGCAAGGTAATTGGGGCC
AGCCTCAACAACCTGCACAGCAGAATAATTTTGCTCCTCAACAACAGCAAGCTCCTCAACAACAAGCTCCACAAGCTGCT
CAACCTCAATACAATGAGCCGCCAATGGATTTTGATGATGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.831
  ssb Glaesserella parasuis strain SC1401

58.065

100

0.61
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.475
  ssb Neisseria meningitidis MC58

45.251

100

0.458

Multiple sequence alignment