Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CCZ37_RS01480 | Genome accession | NZ_CP022741 |
| Coordinates | 295129..295677 (+) | Length | 182 a.a. |
| NCBI ID | WP_094499568.1 | Uniprot ID | A0A223MUU1 |
| Organism | Vibrio qinghaiensis strain Q67 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 290129..300677
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCZ37_RS01465 (CCZ37_01460) | uvrA | 290154..292976 (-) | 2823 | WP_010320580.1 | excinuclease ABC subunit UvrA | - |
| CCZ37_RS01470 (CCZ37_01465) | galU | 293209..294078 (-) | 870 | WP_010320581.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| CCZ37_RS01475 (CCZ37_01470) | qstR | 294196..294843 (-) | 648 | WP_167372363.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| CCZ37_RS01480 (CCZ37_01475) | ssb | 295129..295677 (+) | 549 | WP_094499568.1 | single-stranded DNA-binding protein | Machinery gene |
| CCZ37_RS01485 (CCZ37_01480) | csrD | 295831..297819 (+) | 1989 | WP_167372364.1 | RNase E specificity factor CsrD | - |
| CCZ37_RS01490 (CCZ37_01485) | - | 297832..299274 (+) | 1443 | WP_094499570.1 | MSHA biogenesis protein MshI | - |
| CCZ37_RS01495 (CCZ37_01490) | gspM | 299271..299915 (+) | 645 | WP_094499571.1 | type II secretion system protein GspM | - |
| CCZ37_RS01500 (CCZ37_01495) | - | 299905..300231 (+) | 327 | WP_033197482.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20038.24 Da Isoelectric Point: 5.2257
>NTDB_id=242046 CCZ37_RS01480 WP_094499568.1 295129..295677(+) (ssb) [Vibrio qinghaiensis strain Q67]
MASRGVNKVILVGNLGNDPEIRYMPGGAAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQPQQQQGGGWGQPQQPAMQKQPQQPQQQQQS
APQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPGGAAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQPQQQQGGGWGQPQQPAMQKQPQQPQQQQQS
APQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=242046 CCZ37_RS01480 WP_094499568.1 295129..295677(+) (ssb) [Vibrio qinghaiensis strain Q67]
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCTGGTGG
CGCTGCTGTGGCAAATATCACCATTGCAACGTCAGACTCATGGCGTGATAAAGCAACTGGCGAACAACGCGAAAAAACCG
AATGGCACCGTGTTGCGCTGTTTGGCAAATTAGCTGAAGTGGCTGGTGAATACTTGCGTAAAGGTTCACAAGTATACATT
GAAGGTCAGCTACAAACTCGTAAGTGGCAAGATCAAAGTGGACAAGATCGTTATACCACCGAAGTTGTCGTACAAGGCTT
TAATGGTGTGATGCAAATGTTGGGTGGCCGTGCTCAAGGTGGTGCTCCAGCGCAAGGTGGAATGCCGCAACCACAACAGC
AACAAGGTGGCGGATGGGGGCAACCTCAGCAGCCTGCGATGCAAAAGCAACCACAGCAACCACAGCAACAGCAGCAGTCA
GCTCCTCAACAGGCTCAACCTCAGTATAATGAGCCACCAATGGATTTTGATGACGACATCCCGTTTTAG
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCTGGTGG
CGCTGCTGTGGCAAATATCACCATTGCAACGTCAGACTCATGGCGTGATAAAGCAACTGGCGAACAACGCGAAAAAACCG
AATGGCACCGTGTTGCGCTGTTTGGCAAATTAGCTGAAGTGGCTGGTGAATACTTGCGTAAAGGTTCACAAGTATACATT
GAAGGTCAGCTACAAACTCGTAAGTGGCAAGATCAAAGTGGACAAGATCGTTATACCACCGAAGTTGTCGTACAAGGCTT
TAATGGTGTGATGCAAATGTTGGGTGGCCGTGCTCAAGGTGGTGCTCCAGCGCAAGGTGGAATGCCGCAACCACAACAGC
AACAAGGTGGCGGATGGGGGCAACCTCAGCAGCCTGCGATGCAAAAGCAACCACAGCAACCACAGCAACAGCAGCAGTCA
GCTCCTCAACAGGCTCAACCTCAGTATAATGAGCCACCAATGGATTTTGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
83.152 |
100 |
0.841 |
| ssb | Glaesserella parasuis strain SC1401 |
53.571 |
100 |
0.577 |
| ssb | Neisseria meningitidis MC58 |
45.251 |
98.352 |
0.445 |
| ssb | Neisseria gonorrhoeae MS11 |
44.199 |
99.451 |
0.44 |