Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   CCZ37_RS01475 Genome accession   NZ_CP022741
Coordinates   294196..294843 (-) Length   215 a.a.
NCBI ID   WP_167372363.1    Uniprot ID   -
Organism   Vibrio qinghaiensis strain Q67     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 289196..299843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS01465 (CCZ37_01460) uvrA 290154..292976 (-) 2823 WP_010320580.1 excinuclease ABC subunit UvrA -
  CCZ37_RS01470 (CCZ37_01465) galU 293209..294078 (-) 870 WP_010320581.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CCZ37_RS01475 (CCZ37_01470) qstR 294196..294843 (-) 648 WP_167372363.1 LuxR C-terminal-related transcriptional regulator Regulator
  CCZ37_RS01480 (CCZ37_01475) ssb 295129..295677 (+) 549 WP_094499568.1 single-stranded DNA-binding protein Machinery gene
  CCZ37_RS01485 (CCZ37_01480) csrD 295831..297819 (+) 1989 WP_167372364.1 RNase E specificity factor CsrD -
  CCZ37_RS01490 (CCZ37_01485) - 297832..299274 (+) 1443 WP_094499570.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25017.87 Da        Isoelectric Point: 8.4691

>NTDB_id=242045 CCZ37_RS01475 WP_167372363.1 294196..294843(-) (qstR) [Vibrio qinghaiensis strain Q67]
MRKANYTRTIYFLCLDKEQEHPYIDHLTVRLGLPIPKIEPEILRQTYCPDKHKILMIDHADYALLQQRLGNCPLSSQHHE
TILINVLQRLTTNDLLTFGHLKGLFYKNDTLDKIAFGLGEIINGQNWLPRHAVSQLLHYYRYAFESHTAQVITDLTAREI
QILRCLQTGASNNQMSEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQNILS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=242045 CCZ37_RS01475 WP_167372363.1 294196..294843(-) (qstR) [Vibrio qinghaiensis strain Q67]
ATGAGAAAAGCAAACTATACCCGCACCATTTACTTTCTTTGCTTAGATAAAGAGCAAGAACACCCTTATATTGACCATTT
AACCGTTCGGCTTGGACTGCCCATTCCAAAAATTGAGCCTGAAATCCTGCGCCAAACGTATTGTCCAGATAAACACAAAA
TATTGATGATTGACCATGCCGATTATGCGCTACTGCAGCAACGCTTGGGAAACTGCCCATTAAGCAGTCAGCATCATGAA
ACGATCCTTATCAATGTGTTGCAAAGATTAACCACGAATGACTTATTAACCTTTGGCCATTTAAAGGGGCTATTTTATAA
AAATGACACCCTAGATAAAATTGCATTTGGGCTTGGTGAAATCATTAACGGACAAAATTGGCTACCCAGACACGCTGTAA
GCCAGTTACTGCACTACTATCGCTACGCGTTTGAATCCCATACTGCTCAAGTGATTACAGACTTAACCGCCCGCGAAATA
CAGATCCTCCGCTGCTTACAAACTGGCGCATCGAATAACCAAATGTCGGAAGATTTATTCATCAGTGAATTCACGGTCAA
ATCACATCTCTACCAAATATTCAAAAAGCTATCGGTCAAAAATAGGGTCCAAGCGATTGCATGGGCCAATCAAAATATTC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

66.822

99.535

0.665
  qstR Vibrio campbellii strain DS40M4

52.558

100

0.526
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.521

Multiple sequence alignment