Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   hmeg3_RS23025 Genome accession   NZ_CP022736
Coordinates   5102109..5103632 (+) Length   507 a.a.
NCBI ID   WP_094565786.1    Uniprot ID   A0A223PG37
Organism   Herbaspirillum sp. meg3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5097109..5108632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  hmeg3_RS23005 (hmeg3_23005) amt 5098448..5100007 (-) 1560 WP_094565783.1 ammonium transporter -
  hmeg3_RS23010 (hmeg3_23010) - 5100020..5100358 (-) 339 WP_007884397.1 P-II family nitrogen regulator -
  hmeg3_RS23015 (hmeg3_23015) - 5100370..5101155 (-) 786 WP_094565784.1 TorF family putative porin -
  hmeg3_RS24845 - 5101192..5101476 (-) 285 WP_157739330.1 hypothetical protein -
  hmeg3_RS23020 (hmeg3_23020) - 5101782..5102024 (+) 243 WP_094565785.1 accessory factor UbiK family protein -
  hmeg3_RS23025 (hmeg3_23025) comM 5102109..5103632 (+) 1524 WP_094565786.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  hmeg3_RS23030 (hmeg3_23030) - 5103689..5105725 (-) 2037 WP_094565787.1 OPT family oligopeptide transporter -
  hmeg3_RS23035 (hmeg3_23035) - 5105882..5106307 (+) 426 WP_094565788.1 hypothetical protein -
  hmeg3_RS23040 (hmeg3_23040) - 5106415..5107386 (+) 972 WP_094565789.1 DMT family transporter -
  hmeg3_RS23045 (hmeg3_23045) - 5107395..5107910 (+) 516 WP_094565790.1 hypothetical protein -
  hmeg3_RS23050 (hmeg3_23050) - 5108053..5108397 (+) 345 WP_094565791.1 DUF1840 domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54793.63 Da        Isoelectric Point: 8.4005

>NTDB_id=242039 hmeg3_RS23025 WP_094565786.1 5102109..5103632(+) (comM) [Herbaspirillum sp. meg3]
MSLAVLKSRALAGMHAPQVTVEVHLANGLPSFTIVGLPETEVKESKDRVRAALQNARFEFPAKRITVNLAPADLPKESGR
FDLPIALGILAASGQMPADALDGYEFAGELSLSGDLRPIRGALAMTYAMHKSNNSDGCARTFILPRENADEAALVSNATI
FPADSLLQVCAHFAGFDPDARLSRHHPSVQPAAPAYLDFSDVKGQLQAKRALEVAAAGGHSVLLVGPPGTGKSMLAARFP
GILPPMTDDEALESAAVQSVTGGFSTTRWKMRPYRSPHHTASGVALVGGGGTPRPGEISLAHRGVLFLDELPEFDRKVLE
VLREPMESGRITISRAARQADFPARFQLIAAMNPCPCGFFGHREKQCRCTPDQIGRYQGKISGPLLDRIDMQIQVGALAH
DELLQQANGETSASIAGRVARSFDLQQQRQQKSNHLLSTREIDMHCKPDDAGEDLLKAAMTRLNWSARAYHRVLKVARTI
ADLGQAPVIGKAHIAEAIQYRRALREQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=242039 hmeg3_RS23025 WP_094565786.1 5102109..5103632(+) (comM) [Herbaspirillum sp. meg3]
ATGAGTCTTGCTGTATTAAAGAGCCGTGCGCTTGCGGGTATGCATGCACCGCAGGTCACGGTGGAAGTTCACCTTGCCAA
CGGCTTACCCTCCTTCACCATCGTTGGCCTCCCTGAAACCGAGGTCAAGGAATCCAAAGATCGCGTCCGCGCGGCCTTGC
AGAACGCACGATTCGAATTCCCGGCGAAAAGAATCACTGTCAACCTAGCGCCGGCAGATCTGCCGAAAGAATCCGGCCGC
TTCGACCTGCCGATTGCACTGGGCATTCTTGCCGCATCAGGCCAGATGCCTGCCGATGCGCTGGATGGCTATGAATTCGC
CGGTGAGCTATCGCTCTCCGGCGACCTGAGACCAATCCGGGGCGCACTGGCAATGACCTACGCCATGCACAAGTCGAATA
ACAGCGATGGCTGCGCGCGCACCTTCATCTTGCCGCGCGAGAATGCCGACGAAGCAGCATTGGTCAGCAATGCGACAATC
TTTCCCGCCGACTCTCTATTGCAAGTGTGCGCGCATTTCGCCGGCTTTGATCCGGATGCGAGATTGAGCCGCCATCACCC
TTCTGTGCAGCCTGCGGCACCAGCGTATCTGGATTTTTCCGACGTCAAAGGGCAGTTACAGGCCAAGCGCGCATTGGAAG
TCGCCGCAGCCGGCGGCCACAGCGTCCTTTTAGTAGGTCCGCCAGGAACAGGCAAATCCATGCTGGCGGCGCGCTTTCCA
GGTATCTTGCCGCCCATGACCGATGACGAAGCGCTGGAATCTGCAGCGGTTCAGTCGGTCACCGGCGGGTTCTCCACCAC
GCGATGGAAAATGCGTCCCTACAGATCGCCTCACCATACTGCGTCCGGCGTAGCGCTGGTCGGCGGCGGTGGGACACCAC
GCCCGGGGGAAATCTCTCTGGCGCATCGCGGGGTTTTATTTCTGGATGAATTGCCTGAATTTGATCGCAAAGTCCTGGAA
GTATTGCGCGAGCCGATGGAGTCCGGCCGGATTACCATCTCGCGTGCGGCACGACAGGCTGACTTTCCTGCGAGATTTCA
GCTGATTGCCGCCATGAACCCGTGTCCATGCGGTTTCTTTGGCCATCGGGAGAAGCAATGCCGCTGTACGCCCGATCAAA
TCGGCCGGTATCAGGGAAAAATCTCCGGCCCTTTGCTGGATCGCATCGACATGCAAATTCAGGTCGGCGCACTCGCGCAT
GACGAACTACTGCAGCAAGCCAACGGCGAAACATCCGCAAGCATCGCAGGACGCGTAGCGCGCAGCTTCGATTTGCAGCA
ACAGCGTCAGCAAAAGAGCAACCACCTTTTGTCGACGCGTGAAATCGACATGCACTGCAAACCCGACGACGCCGGTGAGG
ATTTGCTGAAGGCCGCCATGACACGGCTGAACTGGTCGGCACGCGCCTATCATCGCGTGCTCAAAGTAGCGCGTACCATT
GCCGATCTCGGGCAAGCTCCCGTCATCGGCAAGGCCCACATCGCCGAAGCAATCCAATACCGCCGCGCCTTGCGCGAACA
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-401)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)

Subunit ChlI of Mg-chelatase (ChlI)

(21-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223PG37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.082

99.211

0.527
  comM Vibrio campbellii strain DS40M4

52.976

99.408

0.527
  comM Glaesserella parasuis strain SC1401

52.268

100

0.523
  comM Haemophilus influenzae Rd KW20

51.866

100

0.521
  comM Legionella pneumophila str. Paris

50.097

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.097

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.047

100

0.471

Multiple sequence alignment