Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CI104_RS25025 Genome accession   NZ_CP022695
Coordinates   5074509..5076029 (+) Length   506 a.a.
NCBI ID   WP_042326052.1    Uniprot ID   A0A8H9NYR0
Organism   Citrobacter farmeri strain AUSMDU00008141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5069509..5081029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CI104_RS25005 (CI104_25005) ilvE 5071064..5071993 (-) 930 WP_042326056.1 branched-chain-amino-acid transaminase -
  CI104_RS25010 (CI104_25010) ilvM 5072012..5072275 (-) 264 WP_042326055.1 acetolactate synthase 2 small subunit -
  CI104_RS25015 (CI104_25015) ilvG 5072272..5073918 (-) 1647 WP_094465810.1 acetolactate synthase 2 catalytic subunit -
  CI104_RS29390 ilvX 5073921..5073971 (-) 51 WP_195297387.1 peptide IlvX -
  CI104_RS25020 (CI104_25020) ilvL 5074058..5074156 (-) 99 WP_042326053.1 ilv operon leader peptide -
  CI104_RS25025 (CI104_25025) comM 5074509..5076029 (+) 1521 WP_042326052.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CI104_RS25030 (CI104_25030) maoP 5076055..5076393 (-) 339 WP_042326051.1 macrodomain Ori organization protein MaoP -
  CI104_RS25035 (CI104_25035) hdfR 5076513..5077346 (+) 834 WP_042326050.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55024.90 Da        Isoelectric Point: 6.9982

>NTDB_id=241760 CI104_RS25025 WP_042326052.1 5074509..5076029(+) (comM) [Citrobacter farmeri strain AUSMDU00008141]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLDRYELVGELALTGALRGVPGAISSATEAIRAGRCIIVAKENEEEVGLIEGDGCLVADHL
QAVCAFLEGKHDLNHPEVSDEVTCMSSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLASRLNGLLPALSNE
EALESAAILSLINSNSVQKQWKQRPFRAPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRSTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ENSITVKQRVIAAQERQHKRQGKLNALLQNREIREHCPLSSEDAQWLEETLIHLGLSIRAWQRLLKVSRTIADLAQAEQI
SRRHLQEAVSYRAIDRLLAHLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=241760 CI104_RS25025 WP_042326052.1 5074509..5076029(+) (comM) [Citrobacter farmeri strain AUSMDU00008141]
ATGTCACTGTCAATTGTTCATACACGCGCTGCGTTGGGGGTGAATGCACCGGCGATTACCATCGAAGTGCATATCAGTAA
CGGTCTGCCTGGCTTAACGTTGGTGGGATTACCAGAAACAACCGTCAAAGAGGCACGCGATCGGGTACGCAGTGCGATCA
TCAATAGCGGATATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCAGCAGATCTTCCCAAAGAGGGCGGGAGA
TACGATTTACCTATTGCTGTGGCGCTTCTGGTTGCATCTGAGCAGCTTACAACACATAAACTCGACCGATATGAGTTAGT
GGGTGAATTGGCGCTTACAGGCGCATTACGCGGCGTTCCCGGCGCTATATCCAGCGCGACCGAAGCGATTCGCGCGGGAA
GATGCATAATCGTGGCAAAAGAGAACGAAGAAGAGGTCGGGCTGATTGAGGGGGACGGATGTTTGGTTGCCGATCATCTG
CAAGCCGTCTGCGCATTCCTGGAAGGAAAACATGACCTTAACCATCCAGAAGTCAGCGACGAGGTAACCTGCATGTCATC
TGACGATCTCAGCGATATTATTGGTCAGGAGCAAGGAAAACGCAGCCTTGAGATCACCGCCGCGGGTGGGCATAACCTGT
TGTTAGTTGGTCCACCGGGTACGGGGAAAACGATGCTTGCCAGCCGCCTTAATGGTCTGTTGCCGGCGTTAAGTAACGAA
GAAGCCCTGGAAAGTGCCGCCATCCTCAGCCTGATCAACTCGAACAGCGTGCAAAAACAGTGGAAGCAACGACCTTTCCG
CGCACCACACCACAGTGCATCCCTGACCGCGATGGTTGGTGGCGGTGCGATCCCCGCGCCAGGCGAAATATCTTTAGCAC
ACAACGGAATACTATTTCTTGATGAGCTACCTGAGTTTGAACGACGAACCTTAGATGCCTTACGTGAGCCCATCGAGTCT
GGCCAGATCCACCTTTCTCGTACGCGTGCCAAGATCACCTATCCTGCGCGCTTTCAATTGGTGGCAGCAATGAATCCCAG
TCCCACAGGACACTATCAGGGCAACCATAACCGGAGTACACCTGAACAGACATTACGCTATCTCAGCCGACTCTCAGGTC
CCTTTCTGGACCGCTTTGATCTTTCTCTTGAGATCCCTTTACCCCCACCAGGCATACTCAGCCAACCCGGTGTAAAAGGG
GAAAACAGCATTACGGTTAAACAACGGGTTATAGCTGCGCAGGAACGCCAGCATAAACGCCAGGGCAAACTGAATGCGCT
CCTGCAAAACAGGGAGATACGTGAACACTGTCCGTTATCGAGTGAAGATGCGCAGTGGCTGGAGGAGACACTCATCCATC
TTGGATTGTCTATACGGGCCTGGCAGCGTTTATTAAAGGTCTCGAGGACCATTGCCGACCTTGCGCAAGCCGAACAGATT
TCGCGACGACACTTGCAGGAAGCGGTCAGCTACCGGGCGATAGATAGACTGCTTGCACACCTGCAAAAACAACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.198

99.802

0.601
  comM Haemophilus influenzae Rd KW20

58.893

100

0.589
  comM Vibrio campbellii strain DS40M4

58.812

99.802

0.587
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Legionella pneumophila str. Paris

47.082

98.221

0.462
  comM Legionella pneumophila strain ERS1305867

47.082

98.221

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.744

99.407

0.425

Multiple sequence alignment