Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CI104_RS23310 Genome accession   NZ_CP022695
Coordinates   4705643..4706170 (-) Length   175 a.a.
NCBI ID   WP_042321101.1    Uniprot ID   A0A8H9NYF1
Organism   Citrobacter farmeri strain AUSMDU00008141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4700643..4711170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CI104_RS23295 (CI104_23295) - 4701339..4701620 (+) 282 WP_042321110.1 YjcB family protein -
  CI104_RS23300 (CI104_23300) - 4702178..4704895 (+) 2718 WP_378078408.1 cation-transporting P-type ATPase -
  CI104_RS23305 (CI104_23305) - 4704962..4705393 (-) 432 WP_042321104.1 universal stress protein -
  CI104_RS23310 (CI104_23310) ssb 4705643..4706170 (-) 528 WP_042321101.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CI104_RS23315 (CI104_23315) uvrA 4706423..4709245 (+) 2823 WP_042321098.1 excinuclease ABC subunit UvrA -
  CI104_RS23320 (CI104_23320) - 4709287..4709637 (-) 351 WP_042321097.1 MmcQ/YjbR family DNA-binding protein -
  CI104_RS23325 (CI104_23325) aphA 4709765..4710478 (-) 714 WP_042321094.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18917.98 Da        Isoelectric Point: 5.2456

>NTDB_id=241757 CI104_RS23310 WP_042321101.1 4705643..4706170(-) (ssb) [Citrobacter farmeri strain AUSMDU00008141]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGSWGQPQQPQGGNQFSGGAQPRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=241757 CI104_RS23310 WP_042321101.1 4705643..4706170(-) (ssb) [Citrobacter farmeri strain AUSMDU00008141]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCTGTTGCCAACATCACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAGGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTTGAGAAGTACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGCGGCGCACCGGCTGGTGGCCAGCAGCAGCAAGGTAGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGCCTCGCCCGCAGCAGCAGTCAGCTCCGGCAGCC
CCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.432

100

0.766
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.606
  ssb Neisseria meningitidis MC58

47.222

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.486
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.371

Multiple sequence alignment