Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   CHF41_RS04430 Genome accession   NZ_CP022680
Coordinates   875790..876749 (+) Length   319 a.a.
NCBI ID   WP_119876166.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 870790..881749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS04405 - 870822..871292 (+) 471 Protein_825 methylated-DNA--[protein]-cysteine S-methyltransferase -
  CHF41_RS04410 - 871317..871670 (+) 354 WP_119877131.1 arsenate reductase family protein -
  CHF41_RS04415 - 871693..872178 (+) 486 WP_240622967.1 GNAT family N-acetyltransferase -
  CHF41_RS04420 - 872550..873377 (-) 828 WP_119876164.1 exodeoxyribonuclease III -
  CHF41_RS04425 metG 873580..875583 (+) 2004 WP_119876165.1 methionine--tRNA ligase -
  CHF41_RS04430 coiA 875790..876749 (+) 960 WP_119876166.1 competence protein CoiA Machinery gene
  CHF41_RS04435 pepF 876806..878611 (+) 1806 WP_119876167.1 oligoendopeptidase F Regulator
  CHF41_RS04440 - 878898..879617 (+) 720 WP_119877133.1 O-methyltransferase -
  CHF41_RS04445 - 879679..880677 (+) 999 WP_338058443.1 peptidylprolyl isomerase -
  CHF41_RS04450 - 880871..881365 (+) 495 Protein_834 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37541.33 Da        Isoelectric Point: 9.2828

>NTDB_id=241573 CHF41_RS04430 WP_119876166.1 875790..876749(+) (coiA) [Streptococcus respiraculi strain HTS25]
MLVAKNEQGQSVHLLEQQTVDGQVFFCPGCGGPVRLRKGQVMRPHFAHISLKNCHYFSENESEQHLQLKTSLYQWALQDS
QAELEKRLPEIEQIADIFIEDRLALEIQCSSLPLSRLQERTRSYQQAGYRVLWLLGKDLWLKTRLTNLQKQFLSFSEHTG
FFVWELELKRKKLRLRYLIHEDLHGRMQCLTKEFSFGMGNLLTILRFPYQGEKVAVLKGKPDGQLLAYIARKLRYQSPKW
MAVQAQLYQEGRNLLTQSLDDFYPQIRPPQSGAGFVQVQQDMTDYYANFQTYYQQLACKKEQYLYPPIFYQTILKKNLI

Nucleotide


Download         Length: 960 bp        

>NTDB_id=241573 CHF41_RS04430 WP_119876166.1 875790..876749(+) (coiA) [Streptococcus respiraculi strain HTS25]
ATGCTAGTTGCAAAAAATGAACAAGGACAGTCTGTCCACTTACTCGAACAGCAAACAGTAGACGGTCAAGTGTTTTTTTG
TCCCGGCTGTGGTGGACCTGTACGCTTACGCAAAGGGCAAGTTATGCGACCCCATTTTGCGCATATTTCATTGAAAAATT
GCCATTATTTTTCAGAAAATGAATCGGAACAACACCTTCAGTTGAAGACAAGTTTGTATCAGTGGGCTTTGCAAGATAGC
CAGGCAGAACTCGAAAAGCGTCTGCCTGAGATTGAGCAGATTGCAGATATCTTCATAGAAGACAGACTGGCTCTTGAAAT
CCAATGTTCGAGTTTGCCACTTAGTCGCTTACAAGAGCGGACGCGTTCCTACCAGCAGGCAGGCTATCGTGTCTTGTGGC
TTTTAGGAAAAGATTTATGGTTGAAGACACGTTTGACCAACTTGCAAAAGCAGTTTCTATCTTTTAGCGAGCACACGGGC
TTTTTTGTCTGGGAGTTAGAATTAAAGCGCAAAAAGTTACGTCTGCGCTATCTGATCCACGAGGATTTGCATGGTCGCAT
GCAGTGTTTGACCAAGGAATTTTCCTTTGGAATGGGGAACTTATTGACGATATTACGTTTTCCATATCAAGGGGAAAAAG
TAGCTGTACTAAAAGGGAAGCCAGATGGACAGTTGTTGGCTTATATCGCCCGAAAGCTCCGTTACCAGTCTCCCAAATGG
ATGGCTGTCCAAGCCCAGCTTTACCAGGAAGGGAGAAATCTACTCACTCAAAGCCTCGATGATTTTTATCCCCAAATTCG
CCCGCCCCAGTCAGGAGCTGGATTTGTTCAAGTTCAGCAGGATATGACAGATTATTACGCTAATTTTCAGACCTATTACC
AGCAACTAGCCTGTAAAAAGGAGCAGTATCTCTATCCGCCAATCTTTTATCAGACCATTCTCAAGAAAAATCTGATTTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

49.216

100

0.492
  coiA Streptococcus pneumoniae TIGR4

48.276

100

0.483
  coiA Streptococcus pneumoniae Rx1

48.276

100

0.483
  coiA Streptococcus pneumoniae D39

48.276

100

0.483
  coiA Streptococcus pneumoniae R6

48.276

100

0.483
  coiA Lactococcus lactis subsp. cremoris KW2

43.293

100

0.445

Multiple sequence alignment