Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CHF41_RS04435 Genome accession   NZ_CP022680
Coordinates   876806..878611 (+) Length   601 a.a.
NCBI ID   WP_119876167.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 871806..883611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS04420 - 872550..873377 (-) 828 WP_119876164.1 exodeoxyribonuclease III -
  CHF41_RS04425 metG 873580..875583 (+) 2004 WP_119876165.1 methionine--tRNA ligase -
  CHF41_RS04430 coiA 875790..876749 (+) 960 WP_119876166.1 competence protein CoiA Machinery gene
  CHF41_RS04435 pepF 876806..878611 (+) 1806 WP_119876167.1 oligoendopeptidase F Regulator
  CHF41_RS04440 - 878898..879617 (+) 720 WP_119877133.1 O-methyltransferase -
  CHF41_RS04445 - 879679..880677 (+) 999 WP_338058443.1 peptidylprolyl isomerase -
  CHF41_RS04450 - 880871..881365 (+) 495 Protein_834 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69195.15 Da        Isoelectric Point: 4.5856

>NTDB_id=241574 CHF41_RS04435 WP_119876167.1 876806..878611(+) (pepF) [Streptococcus respiraculi strain HTS25]
MTKQRSEIEEKYQWDLTTIFPTDEAWETELAALQSDVEATAGFAGHLLDSAQRLLEISETQLGLMRRMETLYVYASMKND
QDTREGKYQEFQAKALGLYSTLSQAFAFYEPEFLTVTEEQLAAFMEEEPALKQYSHQFEKLLAGKAHVLSHEVEEVLAAT
SEVFDAPSETFSVLDNASIRFPEITNEEGELVPLSHGSYISFMESSNREVRKDAYEAMYTTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALSANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDVDYKFTYEDALE
KAADTLTIFGDEYSTQVKETFENRWIDVHENEGKRSGAYSGGAYDTNAFMLLNWQDTLDNLYTLIHETGHSLHSMFTRKN
QPYVYGHYSIFLAEIASTTNENLLTEKLLSEVEDDKTRFAILNHYLDGFRGTVFRQTQFAEFEQAIYQADQAGEVLTADF
LNHLYAEINEKYYGLSAEENPQIQFEWARIPHFYYNFYVYQYATGFAAASALSHKIVHGTQEDKEHYLDYLKAGSSDYPL
NVIKKAGVDMTREEYLNDAFKVFEARLTELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=241574 CHF41_RS04435 WP_119876167.1 876806..878611(+) (pepF) [Streptococcus respiraculi strain HTS25]
ATGACAAAACAACGTAGTGAAATTGAAGAAAAATACCAGTGGGACTTGACCACGATTTTTCCAACAGACGAAGCATGGGA
GACAGAACTTGCAGCTCTTCAATCAGATGTCGAGGCGACAGCTGGTTTTGCAGGGCATTTGCTAGACTCTGCTCAGCGTT
TATTAGAAATTAGCGAAACGCAGCTGGGTCTCATGCGCCGCATGGAAACGCTCTATGTTTATGCGTCTATGAAAAATGAC
CAAGATACACGTGAAGGAAAGTACCAAGAATTTCAGGCTAAGGCCCTAGGTTTGTATTCAACTCTTTCACAAGCCTTTGC
TTTCTATGAGCCAGAATTTTTAACTGTGACAGAAGAGCAGTTGGCGGCTTTCATGGAAGAAGAGCCAGCCTTGAAGCAAT
ACAGCCACCAGTTTGAGAAATTATTAGCAGGAAAAGCTCATGTCTTGTCACACGAAGTTGAAGAAGTGCTAGCTGCAACA
AGCGAGGTCTTTGATGCACCATCAGAAACCTTTTCTGTTCTTGATAATGCCAGCATCCGCTTCCCAGAGATTACTAACGA
AGAAGGTGAGCTCGTACCGCTTTCGCATGGTAGCTACATTTCCTTTATGGAATCAAGCAACCGTGAGGTGCGTAAGGATG
CTTATGAGGCGATGTATACTACCTATGAGCAATTCCAGCACACCTATGCAAAAACATTGCAATCAAATGTTAAGGTGAAT
AACCTAAAAGCTCGCTTGCGCAAATACGACAGCGCCCGTCATGCTGCCTTGTCTGCCAACTTTATTCCAGAATCGGTCTA
CGATACCTTGGTAGCAGCGGTCAACAAGCATTTGCCACTTCTACATCGCTATATTAACTTGCGCAAGAAATTGCTCGGTA
TTGACGATTTGAAGATGTATGATATGTACACACCACTTTCTGATGTGGATTACAAATTTACCTATGAAGATGCCTTAGAA
AAGGCGGCAGACACCTTGACTATTTTTGGTGACGAGTATAGTACACAGGTTAAAGAAACCTTTGAAAATCGCTGGATTGA
CGTGCATGAAAATGAAGGAAAACGCTCAGGAGCTTATTCAGGAGGAGCCTATGATACCAACGCCTTTATGCTCTTGAACT
GGCAGGATACGCTAGACAACCTCTATACTCTCATCCATGAGACAGGACATTCGCTTCATTCCATGTTTACACGTAAGAAC
CAGCCTTATGTTTATGGCCACTATTCGATTTTCCTAGCAGAGATTGCCTCAACCACCAATGAGAATCTCTTGACGGAAAA
ACTCTTGTCAGAAGTAGAAGACGACAAGACGCGCTTTGCGATTTTGAACCATTATTTGGACGGATTCCGTGGGACAGTCT
TCCGCCAAACCCAATTTGCTGAGTTTGAACAAGCCATCTACCAGGCAGACCAAGCAGGAGAAGTCCTAACAGCTGATTTC
TTAAATCATTTGTATGCAGAAATCAATGAGAAATACTACGGTTTGTCTGCTGAAGAAAATCCACAAATTCAATTTGAGTG
GGCACGTATTCCGCATTTCTATTACAATTTCTACGTATACCAATACGCAACAGGTTTTGCAGCAGCATCTGCCCTTTCTC
ATAAGATTGTTCATGGCACCCAAGAAGATAAGGAGCACTATCTTGATTACCTCAAAGCAGGTAGCTCAGATTATCCACTC
AATGTCATCAAAAAAGCTGGTGTCGATATGACTCGGGAAGAGTACTTGAACGATGCCTTCAAGGTCTTTGAAGCCCGCTT
GACAGAGCTAGAAGCCTTAGTTGAAAAAGGTGTTCATCTATCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.052

100

0.691

Multiple sequence alignment