Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BaGK_RS16685 Genome accession   NZ_CP022653
Coordinates   3366032..3366673 (-) Length   213 a.a.
NCBI ID   WP_094232700.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3361032..3371673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS16650 (BaGK_16650) - 3362225..3362656 (+) 432 WP_094232696.1 Na(+)/H(+) antiporter subunit B -
  BaGK_RS16655 (BaGK_16655) - 3362656..3362997 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  BaGK_RS16660 (BaGK_16660) - 3362990..3364471 (+) 1482 WP_094232697.1 Na+/H+ antiporter subunit D -
  BaGK_RS16665 (BaGK_16665) - 3364477..3364953 (+) 477 WP_094232698.1 Na+/H+ antiporter subunit E -
  BaGK_RS16670 (BaGK_16670) - 3364953..3365237 (+) 285 WP_094232699.1 Na(+)/H(+) antiporter subunit F1 -
  BaGK_RS16675 (BaGK_16675) mnhG 3365221..3365595 (+) 375 WP_061570550.1 monovalent cation/H(+) antiporter subunit G -
  BaGK_RS16680 (BaGK_16680) - 3365634..3366014 (-) 381 WP_010789785.1 hotdog fold thioesterase -
  BaGK_RS16685 (BaGK_16685) comA 3366032..3366673 (-) 642 WP_094232700.1 response regulator transcription factor Regulator
  BaGK_RS16690 (BaGK_16690) comP 3366754..3369060 (-) 2307 WP_094232701.1 two-component system sensor histidine kinase ComP Regulator
  BaGK_RS16695 (BaGK_16695) comX 3369074..3369241 (-) 168 WP_094232702.1 competence pheromone ComX Regulator
  BaGK_RS16700 (BaGK_16700) comQ 3369225..3370127 (-) 903 WP_094233215.1 polyprenyl synthetase family protein Regulator
  BaGK_RS16705 (BaGK_16705) degQ 3370311..3370454 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  BaGK_RS16710 (BaGK_16710) - 3370913..3371272 (+) 360 WP_094232703.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24062.44 Da        Isoelectric Point: 4.7011

>NTDB_id=241260 BaGK_RS16685 WP_094232700.1 3366032..3366673(-) (comA) [Bacillus atrophaeus strain GQJK17]
MKKILVIDDHPAVMEGTKTILETDENLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGFRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=241260 BaGK_RS16685 WP_094232700.1 3366032..3366673(-) (comA) [Bacillus atrophaeus strain GQJK17]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGAAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGTGCGGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGCCTCATT
CTTCAAGAGGTGGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGCAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAATTGAATGTCGGTTTCCGGACGGAAGCGGTACTGATTGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.252

100

0.897

Multiple sequence alignment