Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   Sp14A_RS01440 Genome accession   NZ_CP022601
Coordinates   266399..267325 (+) Length   308 a.a.
NCBI ID   WP_115129655.1    Uniprot ID   A0A345VHP7
Organism   Streptococcus pluranimalium strain 14A0014     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 261399..272325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sp14A_RS01430 (Sp14A_02940) amiA 262861..264834 (+) 1974 WP_115129653.1 peptide ABC transporter substrate-binding protein Regulator
  Sp14A_RS01435 (Sp14A_02950) amiC 264900..266399 (+) 1500 WP_115129654.1 ABC transporter permease Regulator
  Sp14A_RS01440 (Sp14A_02960) amiD 266399..267325 (+) 927 WP_115129655.1 oligopeptide ABC transporter permease OppC Regulator
  Sp14A_RS01445 (Sp14A_02970) amiE 267334..268383 (+) 1050 WP_115129656.1 ABC transporter ATP-binding protein Regulator
  Sp14A_RS01450 (Sp14A_02980) amiF 268398..269327 (+) 930 WP_104967232.1 ATP-binding cassette domain-containing protein Regulator
  Sp14A_RS01455 (Sp14A_02990) - 269629..271290 (+) 1662 WP_115129657.1 peptide ABC transporter substrate-binding protein -
  Sp14A_RS01460 (Sp14A_03000) - 271405..272319 (+) 915 WP_104967234.1 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34886.00 Da        Isoelectric Point: 8.5817

>NTDB_id=241039 Sp14A_RS01440 WP_115129655.1 266399..267325(+) (amiD) [Streptococcus pluranimalium strain 14A0014]
MAQIDKNKFTFVELDTSAAEVIDSPAYSYWKSVFRQFFAKKSTLVMLIILVAIILMSFIYPMFANYDFKDVSNINDFSKR
FIWPNGEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINTVIGVIVGGIWGVSKSFDRIMLEIYNVISNIPFLLIVIV
LSYSIGAGFWNLIFAFCVTGWLGIAYSIRVQVLRYRDLEYNLASRTLGTPMTKIVLKNLLPQLVSVIMTLVSQMLPMYIS
FEAFLSFFGLGLPISEPSLGRLIANYSTYLTDNAYLFWIPLTTLIMVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=241039 Sp14A_RS01440 WP_115129655.1 266399..267325(+) (amiD) [Streptococcus pluranimalium strain 14A0014]
ATGGCTCAAATCGATAAAAATAAATTTACATTTGTAGAATTAGATACCTCAGCAGCTGAAGTGATTGATTCGCCAGCCTA
TTCTTACTGGAAGTCAGTTTTTCGTCAATTTTTCGCGAAAAAGTCAACGCTTGTCATGTTGATTATCTTAGTTGCTATCA
TTTTGATGAGTTTCATCTATCCTATGTTTGCAAACTATGATTTTAAAGATGTAAGTAATATTAACGATTTCTCTAAACGT
TTTATTTGGCCAAATGGTGAGTACTGGTTTGGAACAGACAAAAATGGTCAATCATTATTCGATGGCGTGTGGTATGGGGC
GAGAAACTCTATCTTAATCTCTGTCATTGCGACATTAATCAATACCGTTATTGGTGTTATTGTCGGTGGTATTTGGGGTG
TGTCCAAGAGTTTTGACCGTATTATGTTAGAAATCTATAATGTCATTTCAAATATTCCTTTCTTATTGATTGTCATTGTT
CTTTCATATTCTATCGGAGCAGGATTCTGGAATCTTATTTTCGCCTTCTGTGTCACGGGTTGGTTGGGGATAGCCTATAG
CATTCGTGTTCAAGTTCTCCGCTATCGCGACTTAGAATACAATTTGGCGAGTCGGACTTTAGGAACCCCAATGACGAAAA
TTGTCCTAAAAAACCTCTTGCCACAATTGGTGTCTGTTATCATGACCTTGGTCAGTCAAATGCTACCGATGTATATTTCT
TTTGAAGCTTTCTTGTCATTCTTTGGACTAGGTCTTCCAATTTCGGAGCCTAGCTTAGGTAGACTTATTGCTAATTATTC
GACTTATTTAACTGATAATGCTTATCTTTTCTGGATTCCACTAACGACCTTGATTATGGTTTCTCTACCGCTCTATATTG
TTGGGCAAAATTTAGCGGATGCTAGTGATCCACGTTCGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345VHP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

71.753

100

0.718
  amiD Streptococcus thermophilus LMD-9

71.753

100

0.718

Multiple sequence alignment