Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   Sp14A_RS01450 Genome accession   NZ_CP022601
Coordinates   268398..269327 (+) Length   309 a.a.
NCBI ID   WP_104967232.1    Uniprot ID   A0A2L0D2U2
Organism   Streptococcus pluranimalium strain 14A0014     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 263398..274327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sp14A_RS01435 (Sp14A_02950) amiC 264900..266399 (+) 1500 WP_115129654.1 ABC transporter permease Regulator
  Sp14A_RS01440 (Sp14A_02960) amiD 266399..267325 (+) 927 WP_115129655.1 oligopeptide ABC transporter permease OppC Regulator
  Sp14A_RS01445 (Sp14A_02970) amiE 267334..268383 (+) 1050 WP_115129656.1 ABC transporter ATP-binding protein Regulator
  Sp14A_RS01450 (Sp14A_02980) amiF 268398..269327 (+) 930 WP_104967232.1 ATP-binding cassette domain-containing protein Regulator
  Sp14A_RS01455 (Sp14A_02990) - 269629..271290 (+) 1662 WP_115129657.1 peptide ABC transporter substrate-binding protein -
  Sp14A_RS01460 (Sp14A_03000) - 271405..272319 (+) 915 WP_104967234.1 ABC transporter permease -
  Sp14A_RS01465 (Sp14A_03010) - 272330..273361 (+) 1032 WP_115129658.1 ABC transporter permease -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 34977.10 Da        Isoelectric Point: 5.3231

>NTDB_id=241041 Sp14A_RS01450 WP_104967232.1 268398..269327(+) (amiF) [Streptococcus pluranimalium strain 14A0014]
MSEKLVEIKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGDIFFEGEKINGKKSRE
KERELIRKIQMIFQDPAASLNERATIDYIISEGLHNFGLYDNEEDRKAKVRKMIDEVGLLPEHLTRYPHEFSGGQRQRIG
IARALVMRPDFVIADEPISALDVSVRAQVLNLLKELQKEFGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFR
NPIHPYTKSLLSAVPIPDPILERQKELVIYDPSQHDYDTEEPSMVELLPGHYVWGSPTEIAKYKLENPI

Nucleotide


Download         Length: 930 bp        

>NTDB_id=241041 Sp14A_RS01450 WP_104967232.1 268398..269327(+) (amiF) [Streptococcus pluranimalium strain 14A0014]
ATGTCAGAAAAATTAGTTGAAATCAAGGATTTAGAAATCTCCTTCGGTGAAGGGAAAAAGAAATTTGTAGCTGTGAAAAA
CGCCAACTTTTTCATCAATAAAGGAGAAACCTTCTCATTGGTTGGTGAATCTGGTTCAGGTAAGACAACTATCGGTCGTG
CCATTATTGGTTTAAATGATACTAGTGCTGGTGATATTTTCTTTGAAGGAGAAAAAATCAACGGGAAGAAATCTCGTGAA
AAAGAAAGAGAACTCATTCGGAAAATTCAGATGATTTTCCAAGATCCTGCGGCCAGTTTGAATGAACGTGCCACAATTGA
CTACATCATTTCAGAAGGACTTCATAACTTTGGGCTTTATGACAATGAAGAAGATCGTAAAGCGAAAGTTAGAAAAATGA
TCGATGAAGTTGGATTGTTGCCGGAGCACTTGACGCGTTACCCACATGAATTTTCAGGCGGACAACGACAACGTATCGGA
ATAGCTCGTGCCTTGGTTATGCGTCCTGACTTTGTCATTGCGGATGAACCTATTTCCGCTTTAGACGTTTCTGTTCGCGC
ACAGGTTTTGAACCTCTTAAAAGAACTCCAAAAAGAATTTGGTTTAACCTATCTTTTTATTGCCCATGATTTGTCAGTTG
TAAGATTTATTTCGGATCGTATTGCCGTTATCTATAAGGGTGTTATCGTCGAGGTTGCTGAAACGGAAGAATTATTCAGA
AATCCAATTCATCCATACACAAAATCATTGCTATCAGCAGTTCCTATCCCAGATCCAATCTTGGAAAGGCAAAAAGAGTT
GGTCATTTATGATCCAAGTCAGCATGATTATGACACTGAAGAACCAAGTATGGTCGAACTTCTTCCAGGGCATTATGTCT
GGGGAAGCCCAACAGAAATTGCCAAATATAAATTGGAAAACCCTATATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D2U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

81.046

99.029

0.803
  amiF Streptococcus thermophilus LMG 18311

80.392

99.029

0.796
  amiF Streptococcus thermophilus LMD-9

80.065

99.029

0.793

Multiple sequence alignment