Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CHX26_RS15395 Genome accession   NZ_CP022600
Coordinates   3256571..3257113 (-) Length   180 a.a.
NCBI ID   WP_104943128.1    Uniprot ID   A0A2L0GPX8
Organism   Porphyrobacter sp. HT-58-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3251571..3262113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHX26_RS15370 (CHX26_15360) hslV 3252848..3253405 (-) 558 WP_104943124.1 ATP-dependent protease subunit HslV -
  CHX26_RS15375 (CHX26_15365) bamE 3253447..3253914 (-) 468 WP_233997363.1 outer membrane protein assembly factor BamE -
  CHX26_RS15380 (CHX26_15370) - 3254196..3254723 (+) 528 WP_104943126.1 ubiquinol-cytochrome C chaperone family protein -
  CHX26_RS15385 (CHX26_15375) - 3254720..3255256 (+) 537 WP_233997200.1 DUF177 domain-containing protein -
  CHX26_RS15390 (CHX26_15380) - 3255382..3256509 (-) 1128 WP_104943127.1 TonB family protein -
  CHX26_RS15395 (CHX26_15385) ssb 3256571..3257113 (-) 543 WP_104943128.1 single-stranded DNA-binding protein Machinery gene
  CHX26_RS15400 (CHX26_15390) - 3257277..3257951 (-) 675 WP_104943129.1 COQ9 family protein -
  CHX26_RS15405 (CHX26_15395) - 3257953..3258594 (-) 642 WP_233997201.1 ankyrin repeat domain-containing protein -
  CHX26_RS15410 (CHX26_15400) - 3258707..3259312 (+) 606 WP_104943130.1 SCO family protein -
  CHX26_RS15415 (CHX26_15405) - 3259300..3259787 (+) 488 Protein_3079 YcgN family cysteine cluster protein -
  CHX26_RS15420 (CHX26_15410) - 3259784..3260506 (+) 723 WP_104943131.1 SprT family zinc-dependent metalloprotease -
  CHX26_RS15425 (CHX26_15415) - 3260550..3261035 (+) 486 WP_104943132.1 hypothetical protein -
  CHX26_RS15430 (CHX26_15420) ribD 3261044..3262018 (+) 975 WP_335682327.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18158.70 Da        Isoelectric Point: 4.9561

>NTDB_id=241023 CHX26_RS15395 WP_104943128.1 3256571..3257113(-) (ssb) [Porphyrobacter sp. HT-58-2]
MAGSLNKVMLIGNLGKDPEVRTFQNGGKVCNFSIATSETWKDRNTGERQEKTEWHNVAIFNEGLAGVAERYLKKGSKVYI
EGQLQTRKWTDQNGQDRYTTEVVLRGPNSVMTMLDGAPGGGGGGGGGGGGRSGGYGGGGGGGWDQGGGSSGGSGSGGFGG
GPSGGGGGGGYDDLDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=241023 CHX26_RS15395 WP_104943128.1 3256571..3257113(-) (ssb) [Porphyrobacter sp. HT-58-2]
ATGGCGGGTTCGCTCAACAAGGTCATGCTGATTGGCAATCTGGGCAAGGACCCCGAAGTGCGGACCTTCCAGAACGGCGG
CAAGGTCTGCAATTTCTCGATCGCGACCTCGGAAACCTGGAAGGATCGCAATACCGGCGAACGGCAGGAAAAGACCGAAT
GGCACAATGTCGCGATCTTCAACGAAGGTCTGGCGGGCGTGGCCGAACGCTATCTGAAGAAGGGCAGCAAGGTCTATATC
GAAGGCCAGCTCCAGACCCGCAAGTGGACCGACCAGAACGGGCAGGATCGTTACACCACCGAAGTGGTGCTGCGCGGGCC
CAACTCGGTGATGACCATGCTTGACGGCGCACCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCCGGTCGGGCG
GTTATGGCGGCGGCGGTGGCGGCGGCTGGGATCAGGGCGGCGGCAGCAGCGGCGGCTCTGGCAGTGGCGGGTTCGGCGGC
GGCCCCTCTGGCGGTGGCGGTGGCGGCGGCTACGACGATCTTGACGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0GPX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.189

100

0.506
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.494
  ssb Neisseria meningitidis MC58

41.848

100

0.428
  ssb Neisseria gonorrhoeae MS11

41.304

100

0.422
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.367

Multiple sequence alignment