Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CHR26_RS08625 Genome accession   NZ_CP022560
Coordinates   1830233..1831723 (-) Length   496 a.a.
NCBI ID   WP_145913543.1    Uniprot ID   -
Organism   Pseudomonas putida strain B1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825233..1836723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHR26_RS08600 (CHR26_08540) - 1825981..1826892 (-) 912 WP_145913542.1 LysR substrate-binding domain-containing protein -
  CHR26_RS08605 (CHR26_08545) - 1827015..1827173 (+) 159 Protein_1641 hydrolase -
  CHR26_RS08610 (CHR26_08550) - 1827667..1827945 (+) 279 WP_080642829.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CHR26_RS08615 (CHR26_08555) - 1827957..1828241 (+) 285 WP_024717670.1 HigA family addiction module antitoxin -
  CHR26_RS08620 (CHR26_08560) - 1828246..1830033 (-) 1788 WP_095116218.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  CHR26_RS08625 (CHR26_08565) comM 1830233..1831723 (-) 1491 WP_145913543.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CHR26_RS08630 (CHR26_08570) - 1831981..1833999 (+) 2019 WP_145913544.1 DUF4034 domain-containing protein -
  CHR26_RS08635 (CHR26_08575) - 1834005..1834433 (-) 429 WP_016489777.1 molybdopterin-binding protein -
  CHR26_RS08640 (CHR26_08580) - 1834471..1834824 (-) 354 WP_016489776.1 gamma-glutamylcyclotransferase family protein -
  CHR26_RS08645 (CHR26_08585) - 1834825..1835091 (-) 267 WP_024717668.1 accessory factor UbiK family protein -
  CHR26_RS08650 (CHR26_08590) glnK 1835453..1835791 (+) 339 WP_002555808.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52840.56 Da        Isoelectric Point: 7.5368

>NTDB_id=240775 CHR26_RS08625 WP_145913543.1 1830233..1831723(-) (comM) [Pseudomonas putida strain B1]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLSYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTATLADMECLGELALSGKLRPVQGVLPAALAAHEAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILNQRPYPDLSEVQGQLAAKRALMLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
EASADVAARVAQAREVQQRRQGCVNAFLDLDGLRRHCGLTAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCEAI
GRPHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=240775 CHR26_RS08625 WP_145913543.1 1830233..1831723(-) (comM) [Pseudomonas putida strain B1]
ATGTCACTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGTGTGCAGGCACCCGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCCATCTCACTCTGGTCGGCCTGCCAGAAACCACGGTCAAGGAAAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGGCTTAGCTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACTTGGCCATTGCCCTGGGTATCCTCGCCGCAGATGGCCAGGTGCCGACTGCCACCCTGGCCGATATGGAATGCCT
GGGCGAACTGGCGCTTTCGGGGAAATTGCGCCCTGTCCAGGGCGTGCTACCTGCGGCCCTGGCGGCACACGAAGCAGGCC
GGGCGCTGGTGGTGCCACGGGAAAATGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCATTGCCGCCGTACGCGGCCAATGGCTTGATCCTGAATCAACGTCC
CTACCCTGACCTGAGCGAGGTGCAGGGCCAACTGGCGGCCAAGCGCGCGTTGATGCTGGCGGCGGCTGGGGCGCACAACC
TGCTGTTCACCGGGCCACCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCAGGGCTGCTGCCACCGTTGGACGAG
CACGAGGCGCTCGAGGTGGCTGCCATTCAGTCGGTCAGCGGGCATACACCGCTGAGCAGTTGGCCGCAGCGACCGTTTCG
CCATCCCCACCACTCCGCATCCGGCCCGGCACTGGTTGGAGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAACTGCCAGAGTTCGAGCGGCGTGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCACGCGACAAAGTGCGCTTTCCGGCGCGCTTTCAGCTGGTGGCGGCGATGAACCCATG
CCCTTGCGGCTACCTGGGCGACCCTACTGGCCGCTGCCGCTGCAGCTCCGAGCAGATCGCGCGGTACCGCAACAAGCTAT
CAGGGCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAAAGCACCACGCTGAACAATCAGCCCTGTGGT
GAAGCCAGTGCCGATGTGGCAGCCAGGGTAGCGCAGGCGCGGGAGGTACAGCAGCGCCGCCAAGGGTGCGTGAATGCGTT
TCTCGACCTCGACGGGTTGCGTCGCCATTGCGGATTGACGGCGGCGGACCAAGCTTGGCTGGAAGGGGCCTGCGAACGGT
TGACCTTGTCGTTGCGGGCAGCGCACCGGTTGTTGAAAGTGGCGCGGACACTGGCGGACCTCGAGGGTTGTGAGGCAATC
GGCCGGCCACATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.162

99.798

0.56
  comM Haemophilus influenzae Rd KW20

55.2

100

0.556
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

49.699

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.699

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.472

Multiple sequence alignment