Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BSG32_RS02015 Genome accession   NZ_CP022552
Coordinates   382106..383110 (+) Length   334 a.a.
NCBI ID   WP_089190222.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-R     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377106..388110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG32_RS02000 (BSG32_02010) ilvE 378749..379687 (-) 939 WP_015297538.1 branched-chain-amino-acid transaminase -
  BSG32_RS02005 (BSG32_02015) ilvM 379700..379984 (-) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  BSG32_RS02010 (BSG32_02020) ilvG 379995..381641 (-) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  BSG32_RS02015 (BSG32_02025) comM 382106..383110 (+) 1005 WP_089190222.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BSG32_RS02020 (BSG32_02030) - 383168..385516 (+) 2349 WP_005378978.1 hypothetical protein -
  BSG32_RS02025 (BSG32_02035) - 385510..387921 (+) 2412 WP_005378979.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36208.68 Da        Isoelectric Point: 8.7248

>NTDB_id=240652 BSG32_RS02015 WP_089190222.1 382106..383110(+) (comM) [Vibrio parahaemolyticus strain MAVP-R]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHRSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDETQKISMIETYQFFINLL
NHMNFMIKKIHFLH

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=240652 BSG32_RS02015 WP_089190222.1 382106..383110(+) (comM) [Vibrio parahaemolyticus strain MAVP-R]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTCAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGTGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAGGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGAAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCTGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAACACAACTGGAAGTCGCGTCCGTT
TCGTTCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAACTCAGAAAATCTCAATGATTGAAACATATCAATTCTTTATTAACTTATTG
AACCATATGAATTTTATGATTAAAAAAATCCATTTTTTACATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.719

90.719

0.859
  comM Vibrio cholerae strain A1552

84.488

90.719

0.766
  comM Haemophilus influenzae Rd KW20

66.775

91.916

0.614
  comM Glaesserella parasuis strain SC1401

65.686

91.617

0.602
  comM Legionella pneumophila str. Paris

53.795

90.719

0.488
  comM Legionella pneumophila strain ERS1305867

53.795

90.719

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.984

92.515

0.416

Multiple sequence alignment