Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C7X15_RS19360 Genome accession   NZ_CP028320
Coordinates   3915869..3916384 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli O18:H1 strain CFSAN067215     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3910869..3921384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7X15_RS19340 (C7X15_20250) emrA 3911029..3912201 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C7X15_RS19345 (C7X15_20255) emrB 3912218..3913756 (+) 1539 WP_001305258.1 multidrug efflux MFS transporter permease subunit EmrB -
  C7X15_RS19350 (C7X15_20260) - 3914014..3914711 (+) 698 Protein_3740 RNA ligase family protein -
  C7X15_RS19355 (C7X15_20265) - 3914708..3915820 (+) 1113 WP_000638135.1 ATP-binding protein -
  C7X15_RS19360 (C7X15_20270) luxS 3915869..3916384 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  C7X15_RS19365 (C7X15_20275) gshA 3916534..3918090 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C7X15_RS19370 (C7X15_20280) yqaA 3918163..3918591 (-) 429 WP_001287462.1 YqaA family protein -
  C7X15_RS19375 (C7X15_20285) yqaB 3918588..3919154 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C7X15_RS19410 (C7X15_20320) csrA 3920349..3920534 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=240652 C7X15_RS19360 WP_001130208.1 3915869..3916384(-) (luxS) [Escherichia coli O18:H1 strain CFSAN067215]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=240652 C7X15_RS19360 WP_001130208.1 3915869..3916384(-) (luxS) [Escherichia coli O18:H1 strain CFSAN067215]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACTTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment