Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CHQ57_RS21610 Genome accession   NZ_CP022550
Coordinates   4619665..4621179 (+) Length   504 a.a.
NCBI ID   WP_099994592.1    Uniprot ID   A0AAX1PIU5
Organism   Aeromonas salmonicida strain A527     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4614665..4626179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHQ57_RS21595 (CHQ57_21485) - 4616393..4617334 (-) 942 WP_099994590.1 branched-chain amino acid transaminase -
  CHQ57_RS21600 (CHQ57_21490) ilvM 4617347..4617637 (-) 291 WP_005318216.1 acetolactate synthase 2 small subunit -
  CHQ57_RS21605 (CHQ57_21495) ilvG 4617634..4619280 (-) 1647 WP_099994591.1 acetolactate synthase 2 catalytic subunit -
  CHQ57_RS21610 (CHQ57_21500) comM 4619665..4621179 (+) 1515 WP_099994592.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CHQ57_RS21615 (CHQ57_21505) - 4621318..4622217 (+) 900 WP_099994593.1 acyltransferase -
  CHQ57_RS21620 (CHQ57_21510) - 4622376..4622873 (-) 498 WP_099994594.1 DUF523 domain-containing protein -
  CHQ57_RS21625 (CHQ57_21515) - 4622870..4623520 (-) 651 WP_011898224.1 NUDIX hydrolase -
  CHQ57_RS21630 (CHQ57_21520) - 4623595..4624230 (+) 636 WP_099994595.1 nicotinamidase -
  CHQ57_RS21635 (CHQ57_21525) pncB 4624332..4625510 (+) 1179 WP_021138499.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54693.62 Da        Isoelectric Point: 7.4494

>NTDB_id=240639 CHQ57_RS21610 WP_099994592.1 4619665..4621179(+) (comM) [Aeromonas salmonicida strain A527]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=240639 CHQ57_RS21610 WP_099994592.1 4619665..4621179(+) (comM) [Aeromonas salmonicida strain A527]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAATCCCGGGATCGGGTGCGCAGTGCCCTGC
TAAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAACCTGGCCCCCGCCGACCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGGC
GCACCCTGCTGGTACCGAGAGAAAATGGCCCCGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGTACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATATGAGCTGCCTCTGCCGGAGCCCCAGACCACGGACTCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCATTGGAGATCGCTGCCGCCGGCAGCCACAACCTGC
TGTTCATAGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCACCCCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTGACCCCGCGCGCCGGTCATTGGCACCACAGACCCTATCG
CACGCCCCATCACAGTGCCTCCGCCGTGGCCCTGGTGGGCGGTGGCAGCCATCCCAGACCCGGCGAAATATCCTTGGCCC
ACAACGGGGTACTCTTTCTCGACGAGCTGCCGGAGTTCGAGCGCAAGGTACTCGACTCCCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATATTGCGCTATCTCGGCAAGCTCTCCGGCC
CCTTCCTCGATCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTCACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGGGAGCGAATGCTGAGCCGCAATGGCAAGCTCAACAATCT
GCTGGATAGTCGTGAAATCGAAGATATTTGCCGATTATCGCCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TGGGCCTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCACGCACCATAGCCGATCTGGCGGGGCGACCTGCGATC
GAGAAGGAGCATCTGATCGAAGCACTCGGCTACAGGGCCATGGACAGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.466

Multiple sequence alignment