Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CG798_RS17695 Genome accession   NZ_CP022531
Coordinates   3553627..3554064 (-) Length   145 a.a.
NCBI ID   WP_043020787.1    Uniprot ID   -
Organism   Bacillus velezensis strain TB1501     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3548627..3559064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG798_RS17645 (CG798_17645) sinI 3549011..3549184 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  CG798_RS17650 (CG798_17650) sinR 3549218..3549553 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  CG798_RS17655 (CG798_17655) - 3549601..3550386 (-) 786 WP_007408329.1 TasA family protein -
  CG798_RS17660 (CG798_17660) - 3550451..3551035 (-) 585 WP_015240205.1 signal peptidase I -
  CG798_RS17665 (CG798_17665) tapA 3551007..3551678 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  CG798_RS17670 (CG798_17670) - 3551937..3552266 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  CG798_RS17675 (CG798_17675) - 3552306..3552485 (-) 180 WP_003153093.1 YqzE family protein -
  CG798_RS17680 (CG798_17680) comGG 3552542..3552919 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  CG798_RS17685 (CG798_17685) comGF 3552920..3553420 (-) 501 WP_257899725.1 competence type IV pilus minor pilin ComGF -
  CG798_RS17690 (CG798_17690) comGE 3553329..3553643 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  CG798_RS17695 (CG798_17695) comGD 3553627..3554064 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  CG798_RS17700 (CG798_17700) comGC 3554054..3554320 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  CG798_RS17705 (CG798_17705) comGB 3554367..3555404 (-) 1038 WP_094031834.1 competence type IV pilus assembly protein ComGB Machinery gene
  CG798_RS17710 (CG798_17710) comGA 3555391..3556461 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  CG798_RS17715 (CG798_17715) - 3556655..3557605 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  CG798_RS17720 (CG798_17720) - 3557751..3559052 (+) 1302 WP_021494315.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16271.77 Da        Isoelectric Point: 10.2475

>NTDB_id=240435 CG798_RS17695 WP_043020787.1 3553627..3554064(-) (comGD) [Bacillus velezensis strain TB1501]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPAYTHLAVRQKTELLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=240435 CG798_RS17695 WP_043020787.1 3553627..3554064(-) (comGD) [Bacillus velezensis strain TB1501]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACTGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGACTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTTCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566

Multiple sequence alignment