Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CG798_RS17650 Genome accession   NZ_CP022531
Coordinates   3549218..3549553 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain TB1501     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3544218..3554553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG798_RS17630 (CG798_17630) gcvT 3544823..3545924 (-) 1102 Protein_3378 glycine cleavage system aminomethyltransferase GcvT -
  CG798_RS17635 (CG798_17635) - 3546348..3548018 (+) 1671 WP_031378948.1 SNF2-related protein -
  CG798_RS17640 (CG798_17640) - 3548040..3548834 (+) 795 WP_007408330.1 YqhG family protein -
  CG798_RS17645 (CG798_17645) sinI 3549011..3549184 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  CG798_RS17650 (CG798_17650) sinR 3549218..3549553 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  CG798_RS17655 (CG798_17655) - 3549601..3550386 (-) 786 WP_007408329.1 TasA family protein -
  CG798_RS17660 (CG798_17660) - 3550451..3551035 (-) 585 WP_015240205.1 signal peptidase I -
  CG798_RS17665 (CG798_17665) tapA 3551007..3551678 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  CG798_RS17670 (CG798_17670) - 3551937..3552266 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  CG798_RS17675 (CG798_17675) - 3552306..3552485 (-) 180 WP_003153093.1 YqzE family protein -
  CG798_RS17680 (CG798_17680) comGG 3552542..3552919 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  CG798_RS17685 (CG798_17685) comGF 3552920..3553420 (-) 501 WP_257899725.1 competence type IV pilus minor pilin ComGF -
  CG798_RS17690 (CG798_17690) comGE 3553329..3553643 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  CG798_RS17695 (CG798_17695) comGD 3553627..3554064 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  CG798_RS17700 (CG798_17700) comGC 3554054..3554320 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=240433 CG798_RS17650 WP_003153104.1 3549218..3549553(+) (sinR) [Bacillus velezensis strain TB1501]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=240433 CG798_RS17650 WP_003153104.1 3549218..3549553(+) (sinR) [Bacillus velezensis strain TB1501]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment