Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CGZ77_RS08615 Genome accession   NZ_CP022527
Coordinates   1742999..1744492 (+) Length   497 a.a.
NCBI ID   WP_036495968.1    Uniprot ID   -
Organism   Neisseria sp. KEM232     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1737999..1749492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ77_RS12645 - 1738673..1738801 (+) 129 WP_255351469.1 hypothetical protein -
  CGZ77_RS08600 (CGZ77_08605) - 1738939..1740714 (-) 1776 WP_009425966.1 tetratricopeptide repeat protein -
  CGZ77_RS08605 (CGZ77_08610) - 1740819..1741244 (-) 426 WP_009425967.1 DUF5339 family protein -
  CGZ77_RS08610 (CGZ77_08615) ubiB 1741429..1742940 (+) 1512 WP_036495966.1 ubiquinone biosynthesis regulatory protein kinase UbiB -
  CGZ77_RS08615 (CGZ77_08620) comM 1742999..1744492 (+) 1494 WP_036495968.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CGZ77_RS08620 (CGZ77_08625) - 1744644..1745402 (+) 759 WP_036495970.1 SPOR domain-containing protein -
  CGZ77_RS08625 (CGZ77_08630) - 1745431..1746126 (+) 696 WP_009425972.1 thiol:disulfide interchange protein DsbA/DsbL -
  CGZ77_RS08630 (CGZ77_08635) - 1746240..1746506 (-) 267 Protein_1726 transposase -
  CGZ77_RS12105 - 1746586..1747383 (+) 798 WP_369830578.1 hypothetical protein -
  CGZ77_RS08640 (CGZ77_08645) - 1747630..1748610 (+) 981 WP_094031220.1 ribose-phosphate pyrophosphokinase -
  CGZ77_RS08645 (CGZ77_08650) - 1748681..1749253 (+) 573 WP_036496134.1 50S ribosomal protein L25/general stress protein Ctc -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53177.19 Da        Isoelectric Point: 7.6283

>NTDB_id=240321 CGZ77_RS08615 WP_036495968.1 1742999..1744492(+) (comM) [Neisseria sp. KEM232]
MTFAVVHSRALEGMNAPPVEVETHLANGLPQFNIVGLPDTEVKESRDRVRAALIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAVGILAASGQISPEKLPHCEFAGELALSGLLRPIRGAPAMAWQAKQAKRAFIMPSENAAQAAVMQGVEAYGADSL
AAVAAHLNGIETLPRAEAAEVRPSENAVLPDLRDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPSILPPLT
DDELIEVWTLQSLLPHHAQKHSRSRPYKSPHHSASAVALVGGGSDPRPGEISLAHKGVLFLDELPEFDRKVLEALREPLE
SGEIHISRAARQAVFPADFQLIAAMNPCPCGYHGHPVKPCRCTPDAILRYRSKISGPLIDRIDLVIEVPALPADELVSAK
AGEPSAAVLERVLAARERQNARQGKLNRALSPTELDTAAGISAEARETLGGILEKLSLSARSFHRIMRTARTIADLAGDT
EVARGHILRAVGFRRSM

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=240321 CGZ77_RS08615 WP_036495968.1 1742999..1744492(+) (comM) [Neisseria sp. KEM232]
ATGACATTCGCCGTCGTCCACAGCCGCGCCCTCGAAGGCATGAACGCCCCGCCCGTGGAAGTGGAAACCCATCTGGCCAA
CGGCCTGCCGCAGTTCAACATCGTCGGCCTGCCCGACACCGAAGTGAAGGAAAGCCGCGACCGCGTGCGCGCCGCCCTTA
TCCAAAGCGGCTTCGAGTTTCCCGCCAAAAAAATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAATCCGGCCGC
TTCGACCTGCCGATCGCCGTCGGCATTCTCGCCGCCTCCGGCCAGATTTCCCCCGAAAAACTGCCGCATTGCGAATTTGC
CGGCGAACTCGCCCTCTCCGGCCTGCTGCGGCCGATACGCGGCGCACCGGCCATGGCCTGGCAGGCCAAACAGGCAAAAC
GCGCCTTCATCATGCCGTCTGAAAACGCCGCGCAGGCCGCCGTGATGCAGGGCGTGGAAGCCTACGGCGCGGACAGCCTC
GCCGCCGTTGCCGCCCACCTCAACGGCATCGAAACCCTGCCCCGCGCCGAAGCCGCAGAAGTAAGGCCGTCTGAAAATGC
CGTCCTGCCCGACTTGCGCGACGTCAAAGGCCAGCACACCGCCCGCCTTGCCCTCGAAATCGCCGCCGCAGGCGGCCACA
GCCTGCTGATGATGGGCCCGCCCGGCACCGGCAAATCCATGCTCGCCCAACGCCTGCCCTCCATCCTGCCGCCGCTCACC
GACGACGAACTGATAGAAGTGTGGACGCTGCAATCGCTGCTGCCGCACCACGCGCAAAAACACAGCCGCAGCCGCCCCTA
CAAAAGCCCGCACCACTCCGCCAGCGCCGTCGCCCTTGTCGGCGGCGGCTCCGATCCCCGCCCCGGCGAAATCTCGCTGG
CACACAAAGGCGTGCTGTTTCTCGACGAACTGCCCGAGTTCGACCGCAAAGTGCTCGAAGCCCTGCGCGAGCCCCTCGAA
AGCGGCGAAATCCACATCTCCCGCGCCGCCCGCCAGGCCGTGTTCCCCGCCGACTTCCAACTTATCGCCGCCATGAACCC
CTGCCCCTGCGGCTACCACGGCCACCCCGTCAAACCCTGCCGCTGCACGCCCGACGCCATCCTGCGCTACCGCAGCAAAA
TCTCCGGCCCGCTCATCGACCGCATCGACCTCGTCATCGAAGTTCCCGCCCTCCCCGCCGACGAACTCGTCAGCGCCAAA
GCGGGCGAACCCAGCGCGGCGGTTTTAGAACGCGTCCTCGCCGCCCGCGAACGCCAAAACGCGCGGCAGGGCAAGCTCAA
CCGCGCCCTCTCCCCCACCGAGCTGGACACCGCCGCCGGCATATCCGCCGAAGCCAGGGAAACCCTCGGCGGCATACTGG
AAAAACTCTCCCTCTCCGCCCGCAGCTTCCACCGCATCATGCGCACCGCCCGCACCATCGCCGACCTCGCGGGCGACACC
GAAGTGGCGCGCGGCCACATCCTGCGCGCCGTAGGCTTCCGCCGCTCCATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.707

100

0.539
  comM Vibrio campbellii strain DS40M4

51.613

99.799

0.515
  comM Haemophilus influenzae Rd KW20

50.499

100

0.509
  comM Glaesserella parasuis strain SC1401

50.2

100

0.505
  comM Legionella pneumophila str. Paris

46.365

100

0.475
  comM Legionella pneumophila strain ERS1305867

46.365

100

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.539

100

0.441

Multiple sequence alignment