Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   CGZ77_RS04175 Genome accession   NZ_CP022527
Coordinates   844263..845450 (+) Length   395 a.a.
NCBI ID   WP_009425401.1    Uniprot ID   -
Organism   Neisseria sp. KEM232     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 839263..850450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ77_RS04155 (CGZ77_04160) grxC 839833..840093 (+) 261 WP_036495581.1 glutaredoxin 3 -
  CGZ77_RS04160 (CGZ77_04165) secB 840146..840592 (+) 447 WP_009425397.1 protein-export chaperone SecB -
  CGZ77_RS04165 (CGZ77_04170) - 840882..842099 (+) 1218 WP_009425399.1 MFS transporter -
  CGZ77_RS04170 (CGZ77_04175) - 842282..844129 (+) 1848 WP_009425400.1 ABC transporter ATP-binding protein -
  CGZ77_RS04175 (CGZ77_04180) dprA 844263..845450 (+) 1188 WP_009425401.1 DNA-processing protein DprA Machinery gene
  CGZ77_RS04180 (CGZ77_04185) - 845499..845954 (+) 456 WP_009425402.1 DUF494 family protein -
  CGZ77_RS04185 (CGZ77_04190) topA 846089..848395 (+) 2307 WP_009425403.1 type I DNA topoisomerase -
  CGZ77_RS04190 (CGZ77_04195) - 848961..849908 (+) 948 WP_009425407.1 DUF4349 domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 42087.80 Da        Isoelectric Point: 6.9081

>NTDB_id=240308 CGZ77_RS04175 WP_009425401.1 844263..845450(+) (dprA) [Neisseria sp. KEM232]
MEQTAERQSWLKLALMPHIGAETFLQLVGHFGSAAAAWQAGADAVRPLLARKQAREAWANRRGEAERAAEAALRWEEGEG
CRLLMLCDGDFPSMLGEGMTPPPLLFARGNTALLHRPSVAVVGSRHATPQAERIARDFGRALSQQGIAAVSGMAAGIDTA
AHLGALEGAGGTVAVWGTGIDRIYPPSNKNLAYQIAERGLIVSEFPLGTRPLAGNFPRRNRIIAALAQAVLVVEAAVESG
SLITARLAAEMGREVMAVPGSIDNPHSKGCHRLIKEGAKLTESLEDILSECPQLLPNGAASSYSINRETRQDTPRQVQTA
SAQVRQRPSETQEKAQTADGGTGSLLDKMGYDPIHPDTLAERLGLSAADIYAALLEMELEGRVAAASGGRYQRIR

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=240308 CGZ77_RS04175 WP_009425401.1 844263..845450(+) (dprA) [Neisseria sp. KEM232]
ATGGAACAAACAGCCGAACGCCAATCCTGGCTGAAACTCGCCCTGATGCCCCATATCGGCGCGGAAACCTTTTTGCAGCT
GGTCGGCCACTTCGGCAGCGCCGCCGCTGCGTGGCAGGCCGGTGCGGATGCCGTGCGGCCGCTGCTTGCCCGCAAACAGG
CGCGGGAGGCTTGGGCAAACAGGCGCGGCGAGGCCGAACGCGCCGCCGAAGCCGCCCTGCGCTGGGAAGAAGGCGAAGGC
TGCCGCCTGCTGATGCTGTGCGACGGCGACTTCCCCTCCATGCTCGGCGAGGGCATGACGCCGCCGCCTTTGCTGTTTGC
ACGCGGCAATACCGCGCTGCTGCACCGCCCGTCCGTCGCCGTGGTCGGCAGCCGCCACGCCACGCCGCAGGCCGAACGCA
TCGCCCGCGATTTCGGCCGCGCCCTGTCGCAGCAGGGCATCGCCGCCGTTTCCGGCATGGCGGCGGGCATCGACACCGCC
GCCCATCTGGGCGCGCTCGAGGGCGCGGGCGGCACGGTGGCCGTGTGGGGCACGGGCATAGACCGCATCTATCCGCCGTC
GAACAAAAACCTTGCCTACCAAATCGCCGAACGCGGTCTGATTGTCAGCGAGTTCCCGCTGGGTACGCGGCCGCTGGCGG
GCAACTTCCCGCGCCGCAACCGCATCATCGCCGCGCTGGCGCAGGCCGTTTTGGTGGTGGAAGCCGCTGTGGAATCGGGC
TCGCTCATCACCGCGCGGCTGGCGGCGGAAATGGGACGCGAAGTGATGGCCGTGCCCGGCTCGATCGACAACCCGCACAG
CAAGGGCTGCCACAGGCTGATTAAAGAGGGCGCGAAACTCACCGAATCGCTGGAAGACATTCTGAGCGAATGCCCGCAAC
TGTTGCCAAACGGCGCGGCTTCATCATATTCTATAAATAGAGAAACGCGGCAGGACACGCCGCGCCAAGTTCAGACGGCC
TCTGCCCAAGTGCGGCAGAGGCCGTCTGAAACGCAGGAAAAGGCGCAAACGGCAGACGGCGGCACGGGTAGCTTGCTTGA
TAAAATGGGCTACGACCCCATACACCCCGACACTTTGGCCGAGCGCCTCGGCCTGTCTGCCGCCGACATTTACGCCGCGC
TGCTCGAAATGGAACTGGAAGGCCGCGTGGCGGCGGCATCGGGCGGGCGCTACCAGAGAATCCGCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

67.259

99.747

0.671

  dprA Neisseria gonorrhoeae strain FA1090

67.259

99.747

0.671

  dprA Neisseria meningitidis strain C311

66.414

100

0.666

  dprA Neisseria meningitidis MC58

66.414

100

0.666

  dprA Vibrio cholerae strain A1552

37.887

98.228

0.372


Multiple sequence alignment