Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BLI_RS03960 Genome accession   NC_006322
Coordinates   809629..810345 (+) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 804629..815345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLI_RS03945 (BLi00795) - 804832..806244 (+) 1413 WP_009329067.1 alanine/glycine:cation symporter family protein -
  BLI_RS03950 (BLi00796) treP 806433..807845 (+) 1413 WP_011197645.1 PTS system trehalose-specific EIIBC component -
  BLI_RS03955 (BLi00797) treC 807919..809607 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  BLI_RS03960 (BLi00798) treR 809629..810345 (+) 717 WP_009329065.1 trehalose operon repressor Regulator
  BLI_RS03965 (BLi00799) - 810452..811144 (+) 693 WP_003179750.1 N-acetyltransferase -
  BLI_RS03970 (BLi00800) - 811270..815094 (+) 3825 WP_044582027.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=23998 BLI_RS03960 WP_009329065.1 809629..810345(+) (treR) [Bacillus licheniformis DSM 13 = ATCC 14580]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=23998 BLI_RS03960 WP_009329065.1 809629..810345(+) (treR) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412

Multiple sequence alignment