Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CG450_RS18925 Genome accession   NZ_CP022477
Coordinates   3585337..3585828 (-) Length   163 a.a.
NCBI ID   WP_094023937.1    Uniprot ID   -
Organism   Bacillus licheniformis strain BL-010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3560359..3593328 3585337..3585828 within 0


Gene organization within MGE regions


Location: 3560359..3593328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS18775 - 3560359..3562053 (-) 1695 WP_094023908.1 LysM peptidoglycan-binding domain-containing protein -
  CG450_RS18780 - 3562057..3562311 (-) 255 WP_157675220.1 phage holin -
  CG450_RS18785 - 3562317..3562694 (-) 378 WP_094023910.1 hypothetical protein -
  CG450_RS22585 - 3562850..3563035 (+) 186 WP_146842142.1 hypothetical protein -
  CG450_RS22590 - 3563111..3563254 (-) 144 WP_157675222.1 hypothetical protein -
  CG450_RS22595 - 3563268..3563408 (-) 141 WP_157675224.1 hypothetical protein -
  CG450_RS18795 - 3563401..3563730 (-) 330 WP_094023912.1 hypothetical protein -
  CG450_RS18800 - 3563730..3565661 (-) 1932 WP_094023913.1 DUF859 family phage minor structural protein -
  CG450_RS22600 - 3565675..3568686 (-) 3012 WP_198318204.1 phage tail spike protein -
  CG450_RS18810 - 3568686..3569336 (-) 651 WP_094023914.1 hypothetical protein -
  CG450_RS18815 - 3569336..3572590 (-) 3255 WP_094023915.1 hypothetical protein -
  CG450_RS18820 - 3572592..3572840 (-) 249 WP_146842145.1 peptide methionine sulfoxide reductase -
  CG450_RS18825 - 3572906..3573319 (-) 414 WP_094023917.1 hypothetical protein -
  CG450_RS18830 - 3573336..3573962 (-) 627 WP_094023918.1 hypothetical protein -
  CG450_RS18840 - 3574335..3574766 (-) 432 WP_094023920.1 HK97-gp10 family putative phage morphogenesis protein -
  CG450_RS18845 - 3574759..3575082 (-) 324 WP_198318205.1 phage head closure protein -
  CG450_RS18850 - 3575082..3575615 (-) 534 WP_094023922.1 hypothetical protein -
  CG450_RS18855 - 3575653..3575898 (-) 246 WP_094023923.1 hypothetical protein -
  CG450_RS18860 - 3575912..3576832 (-) 921 WP_094023924.1 hypothetical protein -
  CG450_RS18865 - 3576851..3577423 (-) 573 WP_157675226.1 phage scaffolding protein -
  CG450_RS18870 - 3577632..3577811 (-) 180 WP_094023926.1 hypothetical protein -
  CG450_RS22605 - 3577868..3578032 (-) 165 WP_157675228.1 hypothetical protein -
  CG450_RS18875 - 3578039..3579730 (-) 1692 WP_094023927.1 phage minor head protein -
  CG450_RS18880 - 3579705..3581189 (-) 1485 WP_094023928.1 phage portal protein -
  CG450_RS18885 - 3581202..3582413 (-) 1212 WP_094023929.1 PBSX family phage terminase large subunit -
  CG450_RS18890 - 3582400..3583233 (-) 834 WP_094023930.1 terminase small subunit -
  CG450_RS18895 - 3583381..3583803 (-) 423 WP_094023931.1 hypothetical protein -
  CG450_RS18900 - 3583816..3584019 (-) 204 WP_146842146.1 hypothetical protein -
  CG450_RS18905 - 3584031..3584456 (-) 426 WP_094023933.1 helix-turn-helix domain-containing protein -
  CG450_RS22610 - 3584484..3584654 (-) 171 WP_157675230.1 hypothetical protein -
  CG450_RS18910 - 3584666..3584866 (-) 201 WP_094023934.1 hypothetical protein -
  CG450_RS18915 - 3584863..3585108 (-) 246 WP_094023935.1 hypothetical protein -
  CG450_RS18920 - 3585105..3585323 (-) 219 WP_094023936.1 hypothetical protein -
  CG450_RS18925 ssbA 3585337..3585828 (-) 492 WP_094023937.1 single-stranded DNA-binding protein Machinery gene
  CG450_RS18930 - 3585851..3586156 (-) 306 WP_094023938.1 hypothetical protein -
  CG450_RS18935 - 3586210..3587043 (-) 834 WP_094023939.1 ATP-binding protein -
  CG450_RS18940 - 3587012..3587788 (-) 777 WP_094023940.1 helix-turn-helix domain-containing protein -
  CG450_RS23235 - 3587915..3588049 (-) 135 WP_261795708.1 hypothetical protein -
  CG450_RS18945 - 3588162..3588824 (-) 663 WP_094023941.1 putative HNHc nuclease -
  CG450_RS18950 - 3588837..3589775 (-) 939 WP_232513262.1 DUF1351 domain-containing protein -
  CG450_RS18955 - 3589790..3590566 (-) 777 WP_094023943.1 ERF family protein -
  CG450_RS22615 - 3590665..3590808 (-) 144 WP_157675234.1 hypothetical protein -
  CG450_RS18960 - 3590879..3591058 (-) 180 WP_094023944.1 transcriptional regulator -
  CG450_RS18965 - 3591095..3591298 (-) 204 WP_094023945.1 helix-turn-helix transcriptional regulator -
  CG450_RS18970 - 3591460..3592077 (+) 618 WP_094023946.1 LexA family transcriptional regulator -
  CG450_RS18975 - 3592204..3593328 (+) 1125 WP_094023947.1 site-specific integrase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17958.51 Da        Isoelectric Point: 5.1959

>NTDB_id=239918 CG450_RS18925 WP_094023937.1 3585337..3585828(-) (ssbA) [Bacillus licheniformis strain BL-010]
MINNVVLVGRLTADIDLRYTQTGTAVGNFNLAVNRTFTNQNGEREADYIRCVAWRKTAETAANFVGKGSLVGIQGRIQTR
HYDNEQGQRIYITEVVAESIQYLDSRNKSNNGGQSYGQGNSQGNYQNSTGGNFGGNQGGFGQHRDPFERTADPIEISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=239918 CG450_RS18925 WP_094023937.1 3585337..3585828(-) (ssbA) [Bacillus licheniformis strain BL-010]
ATGATCAATAACGTGGTGCTGGTTGGCCGGTTAACCGCCGACATCGACCTTAGATACACGCAAACAGGAACGGCAGTGGG
AAACTTTAACCTGGCAGTAAACCGCACATTTACCAATCAAAACGGCGAACGTGAGGCGGATTATATCCGCTGCGTTGCCT
GGAGAAAGACGGCAGAAACGGCAGCAAACTTCGTCGGCAAAGGCTCCTTGGTAGGCATTCAAGGACGCATCCAGACAAGA
CACTATGACAACGAGCAAGGGCAGCGCATTTATATCACGGAAGTTGTAGCTGAATCCATCCAGTACTTAGATAGCCGAAA
CAAGTCGAATAACGGCGGTCAAAGTTACGGACAGGGAAACAGTCAAGGAAACTATCAAAATAGCACAGGCGGAAATTTTG
GAGGCAATCAGGGCGGATTTGGCCAACACAGGGACCCGTTTGAACGGACAGCTGATCCAATTGAAATTTCTGATGATGAT
TTGCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.395

100

0.595
  ssb Latilactobacillus sakei subsp. sakei 23K

54.545

100

0.589
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.481

66.258

0.374
  ssb Neisseria meningitidis MC58

34.483

100

0.368
  ssb Neisseria gonorrhoeae MS11

34.483

100

0.368

Multiple sequence alignment