Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CG015_RS02795 | Genome accession | NZ_CP022468 |
| Coordinates | 584654..585199 (+) | Length | 181 a.a. |
| NCBI ID | WP_129532194.1 | Uniprot ID | - |
| Organism | Vibrio anguillarum strain MHK3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 579654..590199
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CG015_RS02780 (CG015_02765) | uvrA | 579745..582567 (-) | 2823 | WP_026029161.1 | excinuclease ABC subunit UvrA | - |
| CG015_RS02785 (CG015_02770) | galU | 582734..583603 (-) | 870 | WP_013857894.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| CG015_RS02790 (CG015_02775) | qstR | 583721..584368 (-) | 648 | WP_026027842.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| CG015_RS02795 (CG015_02780) | ssb | 584654..585199 (+) | 546 | WP_129532194.1 | single-stranded DNA-binding protein | Machinery gene |
| CG015_RS02800 (CG015_02785) | csrD | 585329..587317 (+) | 1989 | WP_129532195.1 | RNase E specificity factor CsrD | - |
| CG015_RS02805 (CG015_02790) | - | 587330..588772 (+) | 1443 | WP_129532196.1 | MSHA biogenesis protein MshI | - |
| CG015_RS02810 (CG015_02795) | gspM | 588769..589413 (+) | 645 | WP_129532197.1 | type II secretion system protein GspM | - |
| CG015_RS02815 (CG015_02800) | - | 589403..589729 (+) | 327 | WP_129532198.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 19972.13 Da Isoelectric Point: 5.2257
>NTDB_id=239705 CG015_RS02795 WP_129532194.1 584654..585199(+) (ssb) [Vibrio anguillarum strain MHK3]
MASRGVNKVILVGNLGNDPEIRYMPGGAAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQQQQQGGGWGQPQQPAMQKQPQQQQQQQQSA
PQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPGGAAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQQQQQGGGWGQPQQPAMQKQPQQQQQQQQSA
PQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 546 bp
>NTDB_id=239705 CG015_RS02795 WP_129532194.1 584654..585199(+) (ssb) [Vibrio anguillarum strain MHK3]
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCTGGTGG
CGCTGCTGTGGCAAATATCACCATTGCAACGTCAGATTCATGGCGTGATAAAGCAACTGGCGAGCAACGCGAAAAAACCG
AATGGCACCGTGTTGCGCTGTTTGGCAAATTAGCCGAAGTGGCTGGTGAATACTTACGTAAAGGTTCACAAGTGTACATT
GAAGGTCAGCTACAAACTCGTAAGTGGCAAGATCAAAGCGGACAAGATCGTTATACCACCGAAGTTGTCGTACAAGGTTT
TAATGGTGTGATGCAAATGTTGGGTGGCCGTGCTCAAGGTGGTGCTCCAGCGCAAGGTGGAATGCCACAACAACAGCAAC
AAGGTGGCGGATGGGGGCAACCTCAGCAGCCTGCGATGCAAAAGCAACCACAGCAACAGCAACAGCAACAGCAGTCAGCT
CCTCAACAGGCTCAACCTCAGTATAATGAACCACCAATGGATTTTGATGACGACATCCCATTCTAA
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCTGGTGG
CGCTGCTGTGGCAAATATCACCATTGCAACGTCAGATTCATGGCGTGATAAAGCAACTGGCGAGCAACGCGAAAAAACCG
AATGGCACCGTGTTGCGCTGTTTGGCAAATTAGCCGAAGTGGCTGGTGAATACTTACGTAAAGGTTCACAAGTGTACATT
GAAGGTCAGCTACAAACTCGTAAGTGGCAAGATCAAAGCGGACAAGATCGTTATACCACCGAAGTTGTCGTACAAGGTTT
TAATGGTGTGATGCAAATGTTGGGTGGCCGTGCTCAAGGTGGTGCTCCAGCGCAAGGTGGAATGCCACAACAACAGCAAC
AAGGTGGCGGATGGGGGCAACCTCAGCAGCCTGCGATGCAAAAGCAACCACAGCAACAGCAACAGCAACAGCAGTCAGCT
CCTCAACAGGCTCAACCTCAGTATAATGAACCACCAATGGATTTTGATGACGACATCCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
83.06 |
100 |
0.84 |
| ssb | Glaesserella parasuis strain SC1401 |
54.497 |
100 |
0.569 |
| ssb | Neisseria meningitidis MC58 |
43.548 |
100 |
0.448 |
| ssb | Neisseria gonorrhoeae MS11 |
43.889 |
99.448 |
0.436 |