Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   CG015_RS02790 Genome accession   NZ_CP022468
Coordinates   583721..584368 (-) Length   215 a.a.
NCBI ID   WP_026027842.1    Uniprot ID   -
Organism   Vibrio anguillarum strain MHK3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 578721..589368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG015_RS02780 (CG015_02765) uvrA 579745..582567 (-) 2823 WP_026029161.1 excinuclease ABC subunit UvrA -
  CG015_RS02785 (CG015_02770) galU 582734..583603 (-) 870 WP_013857894.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CG015_RS02790 (CG015_02775) qstR 583721..584368 (-) 648 WP_026027842.1 LuxR C-terminal-related transcriptional regulator Regulator
  CG015_RS02795 (CG015_02780) ssb 584654..585199 (+) 546 WP_129532194.1 single-stranded DNA-binding protein Machinery gene
  CG015_RS02800 (CG015_02785) csrD 585329..587317 (+) 1989 WP_129532195.1 RNase E specificity factor CsrD -
  CG015_RS02805 (CG015_02790) - 587330..588772 (+) 1443 WP_129532196.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25033.82 Da        Isoelectric Point: 8.1663

>NTDB_id=239704 CG015_RS02790 WP_026027842.1 583721..584368(-) (qstR) [Vibrio anguillarum strain MHK3]
MRKANYTRTIYFLCLDKEQEHPYIDHLTDRLGLPIPKIEPEILRQTYCPDKHKILMIDHADYALLQQRLGNCPLSSQHHE
TILINVLQRLTTNDLLTFGHLKGLFYKNDTLDKIAFGLGEIINGQNWLPRHAVSQLLHYYRYAFESHTAQVITDLTAREI
QILRCLQTGASNNQMSEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQNILS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=239704 CG015_RS02790 WP_026027842.1 583721..584368(-) (qstR) [Vibrio anguillarum strain MHK3]
ATGAGAAAAGCAAACTATACCCGCACCATTTACTTTCTTTGCTTAGATAAAGAACAAGAACACCCTTATATTGACCATTT
AACCGATCGGCTTGGACTGCCCATTCCGAAAATTGAGCCTGAAATCCTGCGCCAAACGTATTGTCCAGATAAACACAAAA
TATTGATGATTGATCATGCCGATTATGCGCTACTGCAGCAACGCTTGGGAAACTGCCCATTAAGCAGTCAGCATCATGAA
ACGATCCTTATCAATGTGTTGCAAAGATTAACCACGAATGACTTATTAACCTTTGGCCATTTAAAGGGGCTATTTTATAA
AAATGACACCCTAGATAAAATTGCATTTGGGCTTGGTGAAATCATTAATGGACAAAATTGGCTACCCAGACACGCTGTAA
GCCAGTTACTGCACTACTATCGCTACGCGTTTGAATCCCATACTGCTCAAGTGATTACAGACTTAACCGCCCGCGAAATA
CAGATCCTCCGCTGCTTACAAACTGGCGCATCGAATAACCAAATGTCGGAAGATTTATTCATCAGTGAATTCACGGTCAA
ATCACATCTCTACCAAATATTCAAAAAGCTATCGGTCAAAAATAGGGTCCAAGCGATTGCGTGGGCCAATCAAAATATTC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

66.822

99.535

0.665
  qstR Vibrio campbellii strain DS40M4

52.558

100

0.526
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.521

Multiple sequence alignment