Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CG015_RS01310 Genome accession   NZ_CP022468
Coordinates   282186..283709 (+) Length   507 a.a.
NCBI ID   WP_094146999.1    Uniprot ID   -
Organism   Vibrio anguillarum strain MHK3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 277186..288709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG015_RS01295 (CG015_01290) ilvE 278827..279765 (-) 939 WP_010319931.1 branched-chain-amino-acid transaminase -
  CG015_RS01300 (CG015_01295) ilvM 279778..280062 (-) 285 WP_010319930.1 acetolactate synthase 2 small subunit -
  CG015_RS01305 (CG015_01300) ilvG 280062..281708 (-) 1647 WP_017044151.1 acetolactate synthase 2 catalytic subunit -
  CG015_RS01310 (CG015_01305) comM 282186..283709 (+) 1524 WP_094146999.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CG015_RS01315 (CG015_01310) - 283715..284674 (-) 960 WP_017048695.1 DUF2860 domain-containing protein -
  CG015_RS01320 (CG015_01315) - 284907..285506 (-) 600 WP_026028316.1 thiol:disulfide interchange protein DsbA/DsbL -
  CG015_RS01325 (CG015_01320) - 285537..286523 (-) 987 WP_026028515.1 serine/threonine protein kinase -
  CG015_RS01330 (CG015_01325) ccoG 286570..287988 (-) 1419 WP_017046352.1 cytochrome c oxidase accessory protein CcoG -
  CG015_RS01340 (CG015_01335) - 288258..288524 (-) 267 WP_029189868.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55025.46 Da        Isoelectric Point: 8.9212

>NTDB_id=239699 CG015_RS01310 WP_094146999.1 282186..283709(+) (comM) [Vibrio anguillarum strain MHK3]
MGLAIIHSRASVGVQAPTVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASQQIALTKLDGYEFIGELALSGELRPVKGVLPAALAANRAKRCLVVPHGNGDQAALVAKDQHKSAQTL
LEVCADLCGQQILSLFQTEPKPCRAKNTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMNE
DEAMETASVASLTPQDINQHNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGTQARANPQSILRYLGRLSGPLLDRFDMSIEIPSLPKGMLANGGER
GEATAVVKERVLIARERMVIRNGKVNALLGSREIEQYCPLTKADAEFLENALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IAKPHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=239699 CG015_RS01310 WP_094146999.1 282186..283709(+) (comM) [Vibrio anguillarum strain MHK3]
ATGGGACTCGCAATTATTCACAGCCGAGCCAGTGTTGGCGTGCAAGCACCGACAGTGACAGTTGAAGTACATATTAGCAA
TGGTATGCCCGGTTTTACGTTGGTCGGCTTGCCAGAAACGACGGTCAAAGAGTCTCGCGATCGCGTGCGCAGCGCTATCA
TTAATTCCCGTTTTGAGTTTCCCGCCAAGCGTATTACGGTCAATCTAGCCCCTGCGGATCTCCCCAAAGAGGGCGGTCGA
TTTGATTTACCGATCGCGTTGGGTATTTTGGCGGCCTCACAGCAGATAGCGCTAACGAAGTTAGATGGGTATGAGTTTAT
TGGTGAATTAGCCTTATCTGGTGAGTTGCGTCCTGTTAAAGGTGTATTACCCGCCGCTTTAGCTGCGAATCGAGCCAAGC
GCTGTTTGGTTGTGCCTCATGGTAATGGTGATCAAGCTGCGTTAGTGGCAAAGGATCAGCATAAATCGGCGCAAACACTG
CTTGAGGTGTGTGCTGATTTGTGTGGCCAGCAAATCCTCTCTCTTTTTCAAACCGAACCTAAACCATGCCGAGCGAAAAA
TACTCGCGATCTGCAAGATATCATTGGTCAACAGCAAGGAAAGCGAGCGTTAGAAATCGCAGCTGCGGGCAACCATAACC
TGCTTTTTCTCGGTCCACCCGGAACGGGTAAAACCATGCTTGCCTCTCGGTTGTGTGATTTATTACCAGAAATGAATGAA
GATGAAGCGATGGAAACTGCTTCGGTTGCTTCTCTGACTCCACAAGACATCAACCAGCACAACTGGAAGCAAAGGCCATT
TCGCTCGCCTCATCATTCCAGTTCAATGGCGGCGCTGGTCGGTGGCGGTTCTATTCCGAGGCCGGGGGAAATTTCTTTGG
CACACAATGGGTTATTGTTTCTTGATGAAATGCCGGAATTTGAACGAAAAGTGCTCGACTCATTGCGTGAGCCATTAGAG
TCAGGTGAAATTATTATTTCAAGAGCGCAAGGCAAAACGCGTTTTCCAGCTCGCTTTCAATTAGTGGGGGCGTTGAACCC
CAGCCCAACTGGTTATTACGAAGGCACGCAAGCCAGAGCCAACCCGCAGAGTATTTTGCGCTATTTGGGACGCTTATCGG
GGCCACTGCTTGATCGCTTTGACATGTCGATAGAAATCCCCTCGCTTCCCAAAGGAATGCTGGCAAATGGCGGCGAAAGA
GGTGAAGCAACGGCTGTGGTTAAAGAAAGAGTGTTGATTGCTCGTGAACGGATGGTGATTCGTAATGGCAAGGTTAATGC
TTTGTTGGGGAGCCGAGAAATTGAACAGTATTGCCCTTTAACTAAGGCTGACGCCGAATTTTTGGAAAATGCACTGCACC
GCCTAGGGCTCTCCATCCGCGCGTATCATCGCATTATCAAAGTGGCGCGTACGATTGCGGATTTAGAAGGGGCCGAGCAG
ATTGCTAAGCCCCATCTAGCGGAAGCACTCGGCTATCGAGCGATGGACCGCTTGTTGAAACAACTGACCGCACAAGCGGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

87.968

100

0.88
  comM Vibrio campbellii strain DS40M4

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

65.294

100

0.657
  comM Legionella pneumophila str. Paris

50

98.225

0.491
  comM Legionella pneumophila strain ERS1305867

50

98.225

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.689

100

0.444

Multiple sequence alignment