Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CGZ53_RS08110 | Genome accession | NZ_CP022435 |
| Coordinates | 1587613..1588104 (-) | Length | 163 a.a. |
| NCBI ID | WP_037592710.1 | Uniprot ID | - |
| Organism | Streptococcus uberis strain NZ01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1582613..1593104
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CGZ53_RS08095 (CGZ53_08090) | - | 1585124..1586068 (+) | 945 | WP_015911860.1 | magnesium transporter CorA family protein | - |
| CGZ53_RS08100 (CGZ53_08095) | - | 1586320..1586985 (+) | 666 | WP_037592713.1 | DUF1129 domain-containing protein | - |
| CGZ53_RS08105 (CGZ53_08100) | rpsR | 1587320..1587559 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| CGZ53_RS08110 (CGZ53_08105) | ssb | 1587613..1588104 (-) | 492 | WP_037592710.1 | single-stranded DNA-binding protein | Machinery gene |
| CGZ53_RS08115 (CGZ53_08110) | rpsF | 1588125..1588415 (-) | 291 | WP_015911863.1 | 30S ribosomal protein S6 | - |
| CGZ53_RS08120 (CGZ53_08115) | mutY | 1588638..1589795 (+) | 1158 | WP_041817674.1 | A/G-specific adenine glycosylase | - |
| CGZ53_RS08125 (CGZ53_08120) | trxA | 1589807..1590121 (-) | 315 | WP_015911865.1 | thioredoxin | - |
| CGZ53_RS08130 (CGZ53_08125) | - | 1590233..1592566 (-) | 2334 | WP_100912263.1 | endonuclease MutS2 | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18077.89 Da Isoelectric Point: 4.9371
>NTDB_id=239398 CGZ53_RS08110 WP_037592710.1 1587613..1588104(-) (ssb) [Streptococcus uberis strain NZ01]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAENFQMLESRATREGGSSNSYSNTGFGNDASSNSYSAPSQQTPHFGREESPFGNANPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAENFQMLESRATREGGSSNSYSNTGFGNDASSNSYSAPSQQTPHFGREESPFGNANPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=239398 CGZ53_RS08110 WP_037592710.1 1587613..1588104(-) (ssb) [Streptococcus uberis strain NZ01]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCTGTTGC
TACTTTTACACTTGCTGTTAATCGCACTTTTAAAAGCCAAAATGGTGAGCGTGAAGCAGATTTTATTAACTGTGTTATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCGAAAAAAGGTGCTTTAATCGGTATTACAGGTCGCATTCAGACTCGT
AATTACGAAAATCAGCAAGGTCAACGGGTTTATGTAACTGAAGTGGTTGCGGAAAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCTTCGAACTCTTATAGTAATACTGGCTTTGGCAATGATGCTTCAAGCAATAGTTATTCTGCAC
CTTCTCAACAAACACCTCATTTTGGTCGTGAAGAAAGTCCATTTGGCAATGCCAATCCTATGGATATTTCAGATGACGAT
TTACCTTTCTAA
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCTGTTGC
TACTTTTACACTTGCTGTTAATCGCACTTTTAAAAGCCAAAATGGTGAGCGTGAAGCAGATTTTATTAACTGTGTTATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCGAAAAAAGGTGCTTTAATCGGTATTACAGGTCGCATTCAGACTCGT
AATTACGAAAATCAGCAAGGTCAACGGGTTTATGTAACTGAAGTGGTTGCGGAAAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCTTCGAACTCTTATAGTAATACTGGCTTTGGCAATGATGCTTCAAGCAATAGTTATTCTGCAC
CTTCTCAACAAACACCTCATTTTGGTCGTGAAGAAAGTCCATTTGGCAATGCCAATCCTATGGATATTTCAGATGACGAT
TTACCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.725 |
100 |
0.595 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.595 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50.42 |
73.006 |
0.368 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
65.031 |
0.362 |
| ssb | Vibrio cholerae strain A1552 |
33.714 |
100 |
0.362 |