Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   C7M16_RS01355 Genome accession   NZ_CP028201
Coordinates   282646..283080 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM102753     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 277646..288080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS01325 (C7M16_00262) ydaD 278292..279152 (+) 861 WP_042977133.1 SDR family oxidoreductase -
  C7M16_RS01330 (C7M16_00263) lyxE 279168..279671 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  C7M16_RS01335 (C7M16_00264) ydaF 279759..280310 (+) 552 WP_160221351.1 GNAT family protein -
  C7M16_RS01340 (C7M16_00265) ydaG 280388..280810 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  C7M16_RS01345 (C7M16_00266) amj 281317..282126 (+) 810 WP_015715258.1 lipid II flippase Amj -
  C7M16_RS01350 (C7M16_00267) ydzA 282171..282461 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  C7M16_RS01355 (C7M16_00268) lrpC 282646..283080 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  C7M16_RS01360 (C7M16_00269) topB 283145..285328 (+) 2184 WP_122895046.1 DNA topoisomerase III -
  C7M16_RS01365 (C7M16_00270) ephJ 285531..286619 (+) 1089 WP_122895047.1 lipoprotein YdaJ -
  C7M16_RS01370 (C7M16_00271) epsK 286600..287451 (+) 852 WP_160221352.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=239393 C7M16_RS01355 WP_003246585.1 282646..283080(+) (lrpC) [Bacillus subtilis strain SRCM102753]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=239393 C7M16_RS01355 WP_003246585.1 282646..283080(+) (lrpC) [Bacillus subtilis strain SRCM102753]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment