Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Asalp_RS22240 Genome accession   NZ_CP022426
Coordinates   4755896..4757410 (+) Length   504 a.a.
NCBI ID   WP_021138495.1    Uniprot ID   T0PSH5
Organism   Aeromonas salmonicida subsp. pectinolytica 34mel     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4750896..4762410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Asalp_RS22225 (Asalp_43500) - 4752624..4753565 (-) 942 WP_021138493.1 branched-chain amino acid transaminase -
  Asalp_RS22230 (Asalp_43510) ilvM 4753578..4753868 (-) 291 WP_005318216.1 acetolactate synthase 2 small subunit -
  Asalp_RS22235 (Asalp_43520) ilvG 4753865..4755511 (-) 1647 WP_021138494.1 acetolactate synthase 2 catalytic subunit -
  Asalp_RS22240 (Asalp_43540) comM 4755896..4757410 (+) 1515 WP_021138495.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Asalp_RS22245 (Asalp_43550) - 4757547..4758446 (+) 900 WP_021138496.1 acyltransferase -
  Asalp_RS22250 (Asalp_43560) - 4758605..4759102 (-) 498 WP_034523520.1 DUF523 domain-containing protein -
  Asalp_RS22255 (Asalp_43570) - 4759099..4759749 (-) 651 WP_034523522.1 NUDIX hydrolase -
  Asalp_RS22260 (Asalp_43580) - 4759824..4760459 (+) 636 WP_017412156.1 nicotinamidase -
  Asalp_RS22265 (Asalp_43590) pncB 4760561..4761739 (+) 1179 WP_021138499.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54737.67 Da        Isoelectric Point: 7.4494

>NTDB_id=239319 Asalp_RS22240 WP_021138495.1 4755896..4757410(+) (comM) [Aeromonas salmonicida subsp. pectinolytica 34mel]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTTWLAGQYELPLPEPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ETSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=239319 Asalp_RS22240 WP_021138495.1 4755896..4757410(+) (comM) [Aeromonas salmonicida subsp. pectinolytica 34mel]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAATCCCGGGATCGGGTGCGCAGTGCCCTGC
TAAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAACCTGGCCCCCGCCGACCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAACAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGGC
GCACCCTGCTGGTACCGAGAGAAAATGGCCCGGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGTACCGCCCACCAGCTG
CTGGCCGTCACCACCTGGCTGGCAGGCCAATATGAGCTGCCCCTGCCGGAGCCCCAGACCACGGACTCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCATTGGAGATCGCTGCCGCCGGCAGCCACAATCTGC
TGTTCATCGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCACCCCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTGACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCATCACAGTGCCTCCGCCGTGGCTCTGGTGGGTGGTGGCAGCCACCCAAGACCGGGGGAGATCTCGTTAGCCC
ACAATGGTGTGCTCTTTCTCGACGAGTTGCCGGAGTTCGAACGCAAGGTGCTGGACTCACTGCGAGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATATTGCGCTATCTCGGCAAGCTCTCCGGCC
CCTTCCTCGATCGCTTCGATCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTCACCGGCAAGGCGGAGCGGGGG
GAGACGAGTCAGCAGATCCGCGATCGGGTGCTGGCGGCGCGGGAGCGAATGCTGAGCCGCAATGGCAAGCTCAACAATCT
GCTGGATAGTCGTGAAATCGAAGATATTTGCCGATTATCGCCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TGGGCCTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCACGCACCATAGCCGATCTGGCGGGGCGACCTGCGATC
GAGAAGGAACATCTGATCGAGGCTCTCGGCTACAGGGCCATGGACAGGCTGCTGTCACGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0PSH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

62.749

99.603

0.625
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.464

Multiple sequence alignment