Detailed information NTG0239237

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CCX46_RS25975
• Genome accession: NZ_CP022411
• Coordinates: 5701225..5702097 (+)
• Length: 290 a.a.
• NCBI ID: WP_127929817.1
• Uniprot ID: -
• Organism: Pseudomonas sp. RU47
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5696225..5707097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCX46_RS25950 (CCX46_25485)	-	5696390..5696686 (+)	297	WP_127929813.1	DUF2845 domain-containing protein	-
CCX46_RS25955 (CCX46_25490)	-	5696990..5697346 (-)	357	WP_127929814.1	BON domain-containing protein	-
CCX46_RS25960 (CCX46_25495)	pilA	5697645..5698076 (-)	432	WP_034153877.1	pilin	Machinery gene
CCX46_RS25965 (CCX46_25500)	pilB	5698303..5700003 (+)	1701	WP_127929815.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CCX46_RS25970 (CCX46_25505)	pilC	5700006..5701223 (+)	1218	WP_127929816.1	type II secretion system F family protein	Machinery gene
CCX46_RS25975 (CCX46_25510)	pilD	5701225..5702097 (+)	873	WP_127929817.1	A24 family peptidase	Machinery gene
CCX46_RS25980 (CCX46_25515)	coaE	5702094..5702717 (+)	624	WP_127929818.1	dephospho-CoA kinase	-
CCX46_RS25985 (CCX46_25520)	yacG	5702714..5702914 (+)	201	WP_007909902.1	DNA gyrase inhibitor YacG	-
CCX46_RS25990 (CCX46_25525)	-	5702921..5703136 (-)	216	WP_007909901.1	hypothetical protein	-
CCX46_RS25995 (CCX46_25530)	-	5703202..5703891 (-)	690	WP_127929819.1	energy-coupling factor ABC transporter permease	-
CCX46_RS26000 (CCX46_25535)	-	5704084..5704710 (+)	627	WP_127929820.1	DUF1780 domain-containing protein	-
CCX46_RS26005 (CCX46_25540)	-	5704707..5705234 (+)	528	WP_127929821.1	MOSC domain-containing protein	-
CCX46_RS26010 (CCX46_25545)	-	5705286..5705459 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
CCX46_RS26015 (CCX46_25550)	-	5705523..5706821 (+)	1299	WP_127929822.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32243.53 Da
• Isoelectric Point: 7.3794

>NTDB_id=239237 CCX46_RS25975 WP_127929817.1 5701225..5702097(+) (pilD) [Pseudomonas sp. RU47]
MPIDELFALYPLAFVCTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPSETPLPTYNLMLPHSECPHCAHRIR
PWENIPLLSYLGLRGRCSACAAPISKRYPLTELACGLLSAFIAWHFGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGVFVPLHDALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVVLLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=239237 CCX46_RS25975 WP_127929817.1 5701225..5702097(+) (pilD) [Pseudomonas sp. RU47]
ATGCCTATCGACGAACTGTTCGCCCTGTATCCGCTGGCCTTTGTCTGCACCGCCCTGTTGCTCGGTCTGGTGGTCGGCAG
CTTCCTCAACGTGCTGATCTGGCGCCTGCCGAAAATGCTTGAGCGCGACTGGCGACAGCAGGCCCACGACGTGCTCGGTT
TGCCCAGCGAAACGCCGCTGCCCACCTACAACCTGATGCTGCCGCACTCCGAATGTCCGCATTGCGCCCACCGGATCCGC
CCGTGGGAAAACATTCCGCTGCTCAGTTATCTGGGGCTGCGGGGGCGCTGTTCGGCGTGCGCTGCACCTATCAGCAAACG
ATATCCACTGACCGAGCTGGCCTGCGGGCTGCTCTCGGCATTCATTGCCTGGCACTTCGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTCCTCACCTGGGGTTTGCTGGCGATGAGTCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCGTCTTCGTACCGTTGCACGATGCACTGTGGGGCGCGGT
GGCCGGTTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGATGGCATCGGCCACGGTGATT
TCAAGCTGTTGGCGCTGCTCGGTGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCACTGGTCGGC
GCCATTATCGGGGTGGTTTTGCTACGCCTGCGCGAACAGAAAACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.61	97.241	0.531
pilD	Vibrio campbellii strain DS40M4	52.482	97.241	0.51
pilD	Acinetobacter nosocomialis M2	48.41	97.586	0.472
pilD	Acinetobacter baumannii D1279779	48.239	97.931	0.472
pilD	Neisseria gonorrhoeae MS11	48.148	93.103	0.448