Detailed information NTG0239205

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CGC32_RS00730
• Genome accession: NZ_CP022409
• Coordinates: 151467..152429 (+)
• Length: 320 a.a.
• NCBI ID: WP_089482209.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain G272
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 146467..157429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGC32_RS00700 (CGC32_00700)	panD	147886..148236 (+)	351	WP_000142213.1	aspartate 1-decarboxylase	-
CGC32_RS00705 (CGC32_00705)	-	148247..148540 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
CGC32_RS00710 (CGC32_00710)	-	148540..149535 (+)	996	WP_089482206.1	PDZ domain-containing protein	-
CGC32_RS00715 (CGC32_00715)	comB6	149543..150598 (+)	1056	WP_089482207.1	P-type conjugative transfer protein TrbL	Machinery gene
CGC32_RS00720 (CGC32_00720)	comB7	150614..150727 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
CGC32_RS00725 (CGC32_00725)	comB8	150724..151467 (+)	744	WP_089482208.1	type IV secretion system protein	Machinery gene
CGC32_RS00730 (CGC32_00730)	comB9	151467..152429 (+)	963	WP_089482209.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CGC32_RS00735 (CGC32_00735)	comB10	152422..153558 (+)	1137	WP_089482210.1	DNA type IV secretion system protein ComB10	Machinery gene
CGC32_RS00740 (CGC32_00740)	-	153627..155039 (+)	1413	WP_089482211.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CGC32_RS00745 (CGC32_00745)	gmd	155053..156198 (+)	1146	WP_089483083.1	GDP-mannose 4,6-dehydratase	-
CGC32_RS00750 (CGC32_00750)	-	156191..157123 (+)	933	WP_050851705.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36801.37 Da
• Isoelectric Point: 9.4585

>NTDB_id=239205 CGC32_RS00730 WP_089482209.1 151467..152429(+) (comB9) [Helicobacter pylori strain G272]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=239205 CGC32_RS00730 WP_089482209.1 151467..152429(+) (comB9) [Helicobacter pylori strain G272]
ATGCGTAAGGTTTTATATGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCCTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCTATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGTTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCTCAGAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.558	100	0.953