Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | CGC32_RS00715 | Genome accession | NZ_CP022409 |
| Coordinates | 149543..150598 (+) | Length | 351 a.a. |
| NCBI ID | WP_089482207.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain G272 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 144543..155598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CGC32_RS00680 (CGC32_00680) | - | 144666..144740 (+) | 75 | Protein_134 | universal stress protein | - |
| CGC32_RS00685 (CGC32_00685) | - | 144966..145379 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| CGC32_RS00690 (CGC32_00690) | - | 145399..145674 (+) | 276 | WP_000784960.1 | ATP-dependent Clp protease adaptor ClpS | - |
| CGC32_RS00695 (CGC32_00695) | - | 145674..147896 (+) | 2223 | WP_089482205.1 | AAA family ATPase | - |
| CGC32_RS00700 (CGC32_00700) | panD | 147886..148236 (+) | 351 | WP_000142213.1 | aspartate 1-decarboxylase | - |
| CGC32_RS00705 (CGC32_00705) | - | 148247..148540 (+) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CGC32_RS00710 (CGC32_00710) | - | 148540..149535 (+) | 996 | WP_089482206.1 | PDZ domain-containing protein | - |
| CGC32_RS00715 (CGC32_00715) | comB6 | 149543..150598 (+) | 1056 | WP_089482207.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| CGC32_RS00720 (CGC32_00720) | comB7 | 150614..150727 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| CGC32_RS00725 (CGC32_00725) | comB8 | 150724..151467 (+) | 744 | WP_089482208.1 | type IV secretion system protein | Machinery gene |
| CGC32_RS00730 (CGC32_00730) | comB9 | 151467..152429 (+) | 963 | WP_089482209.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| CGC32_RS00735 (CGC32_00735) | comB10 | 152422..153558 (+) | 1137 | WP_089482210.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| CGC32_RS00740 (CGC32_00740) | - | 153627..155039 (+) | 1413 | WP_089482211.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39754.66 Da Isoelectric Point: 8.8165
>NTDB_id=239202 CGC32_RS00715 WP_089482207.1 149543..150598(+) (comB6) [Helicobacter pylori strain G272]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSTSTLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFVIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTPPTPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSTSTLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFVIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTPPTPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=239202 CGC32_RS00715 WP_089482207.1 149543..150598(+) (comB6) [Helicobacter pylori strain G272]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAGCACACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTGTCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCACTAACCTCAGTCAAAACGCTCTCAATTCCTTACAATATATCA
CGACCCCACCCACTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAGCACACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTGTCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCACTAACCTCAGTCAAAACGCTCTCAATTCCTTACAATATATCA
CGACCCCACCCACTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
96.296 |
100 |
0.963 |