Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   CGC32_RS00725 Genome accession   NZ_CP022409
Coordinates   150724..151467 (+) Length   247 a.a.
NCBI ID   WP_089482208.1    Uniprot ID   -
Organism   Helicobacter pylori strain G272     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145724..156467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC32_RS00700 (CGC32_00700) panD 147886..148236 (+) 351 WP_000142213.1 aspartate 1-decarboxylase -
  CGC32_RS00705 (CGC32_00705) - 148247..148540 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  CGC32_RS00710 (CGC32_00710) - 148540..149535 (+) 996 WP_089482206.1 PDZ domain-containing protein -
  CGC32_RS00715 (CGC32_00715) comB6 149543..150598 (+) 1056 WP_089482207.1 P-type conjugative transfer protein TrbL Machinery gene
  CGC32_RS00720 (CGC32_00720) comB7 150614..150727 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  CGC32_RS00725 (CGC32_00725) comB8 150724..151467 (+) 744 WP_089482208.1 type IV secretion system protein Machinery gene
  CGC32_RS00730 (CGC32_00730) comB9 151467..152429 (+) 963 WP_089482209.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  CGC32_RS00735 (CGC32_00735) comB10 152422..153558 (+) 1137 WP_089482210.1 DNA type IV secretion system protein ComB10 Machinery gene
  CGC32_RS00740 (CGC32_00740) - 153627..155039 (+) 1413 WP_089482211.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  CGC32_RS00745 (CGC32_00745) gmd 155053..156198 (+) 1146 WP_089483083.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28712.93 Da        Isoelectric Point: 8.9604

>NTDB_id=239204 CGC32_RS00725 WP_089482208.1 150724..151467(+) (comB8) [Helicobacter pylori strain G272]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=239204 CGC32_RS00725 WP_089482208.1 150724..151467(+) (comB8) [Helicobacter pylori strain G272]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGAAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGTT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment