Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PBPR_RS18210 Genome accession   NC_006370
Coordinates   4058766..4060298 (-) Length   510 a.a.
NCBI ID   WP_011220084.1    Uniprot ID   -
Organism   Photobacterium profundum SS9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4053766..4065298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBPR_RS29685 - 4054114..4054299 (+) 186 WP_081470369.1 hypothetical protein -
  PBPR_RS18185 (PBPRA3587) - 4054494..4054760 (+) 267 WP_041394597.1 YihD family protein -
  PBPR_RS18190 (PBPRA3588) ccoG 4055012..4056442 (+) 1431 WP_011220080.1 cytochrome c oxidase accessory protein CcoG -
  PBPR_RS18195 (PBPRA3589) - 4056544..4057530 (+) 987 WP_011220081.1 serine/threonine protein kinase -
  PBPR_RS18200 (PBPRA3590) - 4057615..4058217 (+) 603 WP_011220082.1 thiol:disulfide interchange protein DsbA/DsbL -
  PBPR_RS18205 (PBPRA3591) - 4058289..4058744 (+) 456 WP_041394598.1 DUF523 domain-containing protein -
  PBPR_RS18210 (PBPRA3592) comM 4058766..4060298 (-) 1533 WP_011220084.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PBPR_RS18215 (PBPRA3593) ilvG 4060686..4062332 (+) 1647 WP_011220085.1 acetolactate synthase 2 catalytic subunit -
  PBPR_RS18220 ilvM 4062332..4062580 (+) 249 WP_041394599.1 acetolactate synthase 2 small subunit -
  PBPR_RS18225 (PBPRA3594) ilvE 4062602..4063540 (+) 939 WP_011220086.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55042.26 Da        Isoelectric Point: 8.4060

>NTDB_id=23898 PBPR_RS18210 WP_011220084.1 4058766..4060298(-) (comM) [Photobacterium profundum SS9]
MTLAIVHSRACVGVDAPAVTVEVHLSNGMPAFNLVGLPETTVKEARDRVRSAIVNANFEFPSKRLTVNLAPADLPKEGGR
FDLPIALGILAASGQIPMNKLHEYEFLGELALSGDLRPVKGALPAALASTKAGRCLIVPDDNGDQVALVGKDKHRSAGDL
LAVCGHLCGQQQLQLRHRNEAEIAQDRPKNDRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPE
MGHAEALETASVASLTQQSLHEGNWLKRPFRTPHHSSSMAALVGGGSVPKPGEISLAHNGILFLDEMPEFGRKVLDSLRE
PLESGEIVISRAASKTCFPARFQLIGALNPSPTGYYEGNQSRTNPQAILRYLSRLSGPLLDRFDMSIEIPGLPRGTLAEG
GDRGETSAVIQQRVHHARKVMLARGGKVNALLSTRELDTHCALVKEDAEFLESALHQLGLSIRAYHRIIKVARTIADLAG
KDKIERGHLAEALGYRSMDRLLKRLTAQVI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=23898 PBPR_RS18210 WP_011220084.1 4058766..4060298(-) (comM) [Photobacterium profundum SS9]
ATGACTCTTGCGATTGTTCACAGCCGAGCATGTGTGGGTGTTGACGCGCCCGCCGTTACCGTTGAGGTGCATTTGAGTAA
CGGAATGCCTGCCTTCAATTTGGTTGGGTTGCCAGAAACCACGGTCAAAGAGGCACGAGATCGGGTTCGCAGTGCGATTG
TAAATGCGAATTTTGAATTCCCTTCCAAGCGTCTAACCGTCAACTTAGCCCCGGCCGACTTACCCAAAGAAGGGGGGCGA
TTTGATTTGCCTATAGCGTTAGGTATTTTGGCTGCGTCGGGACAAATTCCGATGAATAAACTGCACGAATATGAATTTCT
CGGTGAACTCGCATTATCGGGCGATTTACGTCCGGTTAAAGGGGCGTTGCCAGCAGCGTTGGCATCAACGAAGGCTGGGC
GATGTTTAATTGTTCCTGATGATAATGGCGATCAAGTTGCACTTGTGGGGAAAGATAAACATCGATCTGCTGGCGATTTA
CTGGCTGTCTGTGGGCATTTATGTGGTCAACAACAATTGCAGTTACGTCATCGAAACGAGGCTGAAATAGCCCAAGACCG
CCCTAAAAATGATCGCGATATGCAAGATATTATCGGTCAGCAACAGGGTAAGCGTGCGTTAGAGATTGCCGCGGCTGGTG
GGCATAACTTATTGTTTTTAGGCCCTCCTGGTACGGGTAAAACCATGCTGGCTTCTCGCCTGTGTGATTTATTACCTGAA
ATGGGGCACGCAGAAGCCCTAGAAACGGCATCTGTTGCTTCATTGACTCAGCAGTCATTGCATGAAGGTAACTGGCTTAA
ACGGCCTTTTAGAACCCCGCATCATTCAAGTTCGATGGCGGCTTTAGTCGGGGGCGGCTCTGTGCCGAAGCCTGGTGAAA
TTTCCTTGGCGCATAATGGCATTCTCTTCTTAGATGAAATGCCAGAGTTTGGGCGAAAGGTCTTAGATTCACTGCGTGAG
CCGTTAGAGTCTGGTGAGATTGTGATCTCTCGTGCAGCCAGTAAAACCTGTTTCCCCGCTCGTTTTCAATTGATTGGTGC
CTTAAACCCTAGCCCAACAGGTTATTACGAAGGTAATCAGTCGCGGACTAACCCACAAGCGATATTACGCTACCTTAGCC
GTTTATCTGGCCCGTTATTGGATAGATTCGATATGTCGATAGAAATCCCTGGCCTACCACGTGGCACATTGGCTGAAGGG
GGGGATCGGGGTGAGACCAGCGCCGTTATCCAACAGCGAGTTCATCATGCAAGAAAGGTGATGTTAGCCCGTGGCGGCAA
GGTCAATGCCTTATTGTCTACTCGTGAGTTAGATACTCACTGTGCGCTAGTGAAAGAGGATGCAGAATTTCTAGAAAGCG
CATTACATCAACTTGGTCTATCTATTCGGGCTTATCACCGAATCATTAAAGTGGCGCGAACAATTGCCGATCTAGCGGGG
AAAGACAAGATTGAGCGCGGGCACCTTGCCGAGGCATTAGGCTATCGTTCGATGGACCGATTATTAAAGCGTTTAACCGC
GCAAGTGATTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.471

100

0.765
  comM Vibrio cholerae strain A1552

75.882

100

0.759
  comM Glaesserella parasuis strain SC1401

63.851

99.804

0.637
  comM Haemophilus influenzae Rd KW20

63.116

99.412

0.627
  comM Legionella pneumophila str. Paris

48.497

97.843

0.475
  comM Legionella pneumophila strain ERS1305867

48.497

97.843

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.216

0.427

Multiple sequence alignment