Detailed information NTG0238973

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6668_RS11095
• Genome accession: NZ_CP028166
• Coordinates: 2103200..2104192 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CFSAN064036
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2098200..2109192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6668_RS11075 (C6668_11075)	otnK	2098975..2100237 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
C6668_RS11080 (C6668_11080)	ygbL	2100234..2100872 (+)	639	WP_001278994.1	aldolase	-
C6668_RS11085 (C6668_11085)	ygbM	2100877..2101653 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
C6668_RS11090 (C6668_11090)	ygbN	2101742..2103106 (+)	1365	WP_000104441.1	GntP family transporter	-
C6668_RS11095 (C6668_11095)	rpoS	2103200..2104192 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6668_RS11100 (C6668_11100)	nlpD	2104255..2105349 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C6668_RS11105 (C6668_11105)	pcm	2105534..2106160 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6668_RS11110 (C6668_11110)	surE	2106154..2106915 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6668_RS11115 (C6668_11115)	truD	2106896..2107945 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C6668_RS11120 (C6668_11120)	ispF	2107942..2108421 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6668_RS11125 (C6668_11125)	ispD	2108421..2109131 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=238973 C6668_RS11095 WP_000081550.1 2103200..2104192(-) (rpoS) [Escherichia coli strain CFSAN064036]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=238973 C6668_RS11095 WP_000081550.1 2103200..2104192(-) (rpoS) [Escherichia coli strain CFSAN064036]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715