Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CGC44_RS08265 Genome accession   NZ_CP022376
Coordinates   1687051..1688559 (-) Length   502 a.a.
NCBI ID   WP_071629821.1    Uniprot ID   A0A345JTB2
Organism   Francisella opportunistica strain VA14-2155 isolate     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1682051..1693559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC44_RS08245 (CGC44_08175) nusA 1683611..1685080 (-) 1470 WP_071629818.1 transcription termination factor NusA -
  CGC44_RS08250 (CGC44_08180) rimP 1685097..1685549 (-) 453 WP_071629819.1 ribosome maturation factor RimP -
  CGC44_RS08260 (CGC44_08190) hemE 1685778..1686812 (-) 1035 WP_071629820.1 uroporphyrinogen decarboxylase -
  CGC44_RS08265 (CGC44_08195) comM 1687051..1688559 (-) 1509 WP_071629821.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CGC44_RS08270 (CGC44_08200) - 1688561..1688755 (-) 195 WP_071629822.1 accessory factor UbiK family protein -
  CGC44_RS08275 (CGC44_08205) - 1688830..1690281 (-) 1452 WP_071629823.1 NADH-quinone oxidoreductase subunit N -
  CGC44_RS08280 (CGC44_08210) - 1690297..1691886 (-) 1590 WP_071629824.1 complex I subunit 4 family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55165.67 Da        Isoelectric Point: 8.2130

>NTDB_id=238846 CGC44_RS08265 WP_071629821.1 1687051..1688559(-) (comM) [Francisella opportunistica strain VA14-2155 isolate]
MSLAVLKSRAQLGIEAPLVSIEVHLSNGLPGLSIVGLPEAAVKESKDRVRSAIINTGFNFPNKRITINLAPADLPKSSGR
FDLPIALGILYASGQVNIVKDIAEYEFAGELSLSGELRKISSAIPMAIKCVEEDKKLIVPIQNDKEIGLVESVQAYSFDS
LNSVIEFLSGTEKEPIKPNIEVDFSKLYQDLEDVKGQYQAKRALEIAAAGGHNILLVGPPGTGKTMLASRLNSILPTLDK
KEALSSAMIASIKGESGIAESFYKRPFRHPHHTSSGVSLVGGGSNPMPGEISLAHNGVLFLDELPEFDRKVLEVLREPLE
TGSVNISRAKCQVEYPANFQLIAAMNPCPCGYLGSQFKECTDSIQAIRRYQSKLSGPLLDRIDLHVEVLELSKEDLTNQQ
LRGEKSGIVRERVKKARQLQISRQDKINSMLSSKELDRVCNLNDETRKMLTLAIEKLGLSARGYYKILKVARTIADLNNT
ENIDKLAIQEAISYRKMDKFIK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=238846 CGC44_RS08265 WP_071629821.1 1687051..1688559(-) (comM) [Francisella opportunistica strain VA14-2155 isolate]
ATGTCTTTAGCAGTTCTAAAGAGTCGAGCACAACTTGGTATTGAAGCCCCTCTTGTCTCAATAGAGGTGCATTTATCAAA
TGGCTTGCCAGGCTTATCAATAGTTGGATTACCAGAGGCAGCTGTCAAAGAAAGTAAAGATCGTGTAAGAAGTGCGATCA
TTAATACAGGTTTTAATTTTCCTAATAAGCGTATCACGATCAATCTTGCACCAGCTGATTTGCCTAAAAGTAGTGGTAGA
TTTGATTTGCCAATAGCGTTAGGTATTTTGTATGCCTCTGGACAAGTGAATATTGTCAAAGATATCGCTGAATATGAGTT
TGCTGGTGAGTTATCTTTGAGCGGTGAGCTAAGAAAAATATCTAGCGCCATACCGATGGCTATTAAATGTGTTGAGGAAG
ATAAAAAACTTATTGTGCCAATACAAAATGATAAAGAGATTGGTTTAGTTGAGTCAGTTCAAGCCTACAGCTTTGATAGC
TTAAATAGCGTTATAGAGTTTTTATCAGGAACTGAAAAAGAGCCAATAAAGCCAAATATAGAGGTTGACTTTAGTAAGCT
ATACCAAGATTTAGAAGATGTCAAAGGACAATATCAAGCCAAAAGAGCATTAGAGATTGCTGCGGCTGGTGGTCACAATA
TCCTTTTAGTAGGTCCTCCTGGTACCGGCAAGACAATGTTGGCAAGTAGACTAAATTCAATTTTACCAACGTTAGATAAG
AAAGAAGCGCTCTCATCAGCAATGATTGCATCAATCAAAGGGGAATCAGGAATCGCTGAAAGTTTTTATAAAAGACCATT
TCGTCATCCACATCACACTTCCTCTGGAGTATCTTTAGTTGGCGGCGGCAGTAATCCAATGCCTGGTGAGATTTCTTTAG
CACACAATGGTGTACTTTTTCTTGATGAGTTGCCAGAATTCGATCGTAAAGTCTTAGAAGTCTTGCGTGAGCCTTTAGAA
ACTGGTAGTGTGAATATCTCTAGGGCTAAGTGCCAGGTTGAATATCCGGCAAATTTTCAGTTAATAGCGGCGATGAATCC
ATGCCCATGCGGCTATTTAGGCTCACAATTTAAAGAATGTACTGACTCAATCCAAGCGATTAGAAGGTATCAAAGTAAAC
TATCAGGGCCGCTTTTAGATAGGATAGATCTTCATGTTGAAGTTCTTGAACTTTCAAAAGAGGATCTGACAAATCAGCAG
CTAAGAGGTGAGAAAAGCGGCATAGTTAGGGAGCGAGTTAAAAAAGCCCGCCAGCTACAAATCTCTAGACAAGATAAGAT
TAACTCAATGTTATCTAGTAAAGAGCTTGATAGAGTTTGTAATCTTAATGATGAAACGAGAAAAATGCTTACATTAGCTA
TAGAAAAGCTTGGACTATCTGCAAGAGGGTATTATAAAATACTCAAAGTTGCTAGAACGATAGCAGATCTTAATAATACT
GAGAATATTGATAAATTAGCAATTCAAGAAGCTATTAGTTATAGAAAAATGGATAAGTTTATTAAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345JTB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.969

100

0.526
  comM Vibrio campbellii strain DS40M4

51.772

100

0.524
  comM Glaesserella parasuis strain SC1401

51.874

100

0.524
  comM Vibrio cholerae strain A1552

51.389

100

0.516
  comM Legionella pneumophila str. Paris

50.602

99.203

0.502
  comM Legionella pneumophila strain ERS1305867

50.602

99.203

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49.799

99.203

0.494

Multiple sequence alignment