Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CF386_RS02355 Genome accession   NZ_CP022355
Coordinates   434374..434889 (-) Length   171 a.a.
NCBI ID   WP_089072878.1    Uniprot ID   A0A220VC41
Organism   Paraphotobacterium marinum strain NSCS20N07D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 429374..439889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF386_RS02335 (CF386_02335) - 430021..431064 (-) 1044 WP_089072874.1 rod shape-determining protein -
  CF386_RS02340 (CF386_02340) - 431174..432391 (-) 1218 WP_225971727.1 EAL domain-containing protein -
  CF386_RS02345 (CF386_02345) - 432400..433035 (-) 636 WP_089072876.1 hypothetical protein -
  CF386_RS13585 - 433087..433170 (-) 84 WP_404824952.1 hypothetical protein -
  CF386_RS02350 (CF386_02350) - 433152..433793 (-) 642 WP_089072877.1 glycerophosphodiester phosphodiesterase family protein -
  CF386_RS02355 (CF386_02355) ssb 434374..434889 (-) 516 WP_089072878.1 single-stranded DNA-binding protein Machinery gene
  CF386_RS02360 (CF386_02360) uvrA 435077..437905 (+) 2829 WP_089072879.1 excinuclease ABC subunit UvrA -
  CF386_RS02365 (CF386_02365) - 437955..439111 (-) 1157 Protein_429 pyridoxal-phosphate-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19149.98 Da        Isoelectric Point: 4.8158

>NTDB_id=238721 CF386_RS02355 WP_089072878.1 434374..434889(-) (ssb) [Paraphotobacterium marinum strain NSCS20N07D]
MASRGINKVILVGNLGGDPEVRYLPNGSAVANITLATSESWKDKNTGEQRDKTEWHRVTLYGKLAEIAGEYLKKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMIGGRATNNQQPQFNSPNMQQQSMNSSANNSFENSAPKKQENKPDFDE
SSFDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=238721 CF386_RS02355 WP_089072878.1 434374..434889(-) (ssb) [Paraphotobacterium marinum strain NSCS20N07D]
ATGGCTAGCAGAGGTATAAATAAAGTTATACTGGTTGGTAATTTAGGTGGTGATCCCGAAGTAAGATACCTACCTAATGG
TAGTGCAGTAGCAAACATAACTTTAGCTACTTCTGAATCTTGGAAAGATAAAAACACTGGTGAACAGCGTGATAAAACCG
AGTGGCATAGAGTAACTCTATATGGGAAATTAGCTGAAATTGCAGGTGAGTACCTGAAAAAAGGCTCACAAGTATACGTT
GAGGGTCAATTACAAACACGTAAGTGGCAAGATCAATCAGGACAAGATAGGTATAGTACTGAAGTTGTTGTTCAGGGTTA
TAATGGAACTATGCAAATGATTGGAGGAAGGGCAACTAATAATCAGCAACCTCAATTTAATTCTCCAAATATGCAACAAC
AAAGTATGAATTCATCAGCAAATAACTCTTTTGAAAATTCAGCACCTAAAAAACAAGAAAATAAGCCAGATTTTGACGAA
TCATCATTTGATTTTGATGATGATATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220VC41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.416

100

0.702
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.52
  ssb Neisseria meningitidis MC58

44.382

100

0.462
  ssb Neisseria gonorrhoeae MS11

43.82

100

0.456

Multiple sequence alignment