Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CEQ48_RS18810 Genome accession   NZ_CP022353
Coordinates   2834868..2836391 (+) Length   507 a.a.
NCBI ID   WP_000521796.1    Uniprot ID   -
Organism   Vibrio tarriae strain 2521-89     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2829868..2841391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS18795 (CEQ48_18795) ilvE 2831442..2832380 (-) 939 WP_000201999.1 branched-chain-amino-acid transaminase -
  CEQ48_RS18800 (CEQ48_18800) ilvM 2832392..2832676 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  CEQ48_RS18805 (CEQ48_18805) ilvG 2832688..2834334 (-) 1647 WP_089072244.1 acetolactate synthase 2 catalytic subunit -
  CEQ48_RS18810 (CEQ48_18810) comM 2834868..2836391 (+) 1524 WP_000521796.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CEQ48_RS18815 (CEQ48_18815) - 2836481..2837365 (+) 885 WP_089072245.1 acyltransferase -
  CEQ48_RS18820 (CEQ48_18820) - 2837442..2838044 (-) 603 WP_033933026.1 thiol:disulfide interchange protein DsbA/DsbL -
  CEQ48_RS18825 (CEQ48_18825) - 2838075..2839061 (-) 987 WP_089072246.1 serine/threonine protein kinase -
  CEQ48_RS18830 (CEQ48_18830) ccoG 2839109..2840533 (-) 1425 WP_089072247.1 cytochrome c oxidase accessory protein CcoG -
  CEQ48_RS18835 (CEQ48_18835) - 2840933..2841199 (-) 267 WP_000649654.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55064.16 Da        Isoelectric Point: 8.3602

>NTDB_id=238653 CEQ48_RS18810 WP_000521796.1 2834868..2836391(+) (comM) [Vibrio tarriae strain 2521-89]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSQTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=238653 CEQ48_RS18810 WP_000521796.1 2834868..2836391(+) (comM) [Vibrio tarriae strain 2521-89]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTGGTAGGATTGCCAGAAACCACAGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCGAAGCGCATTACGGTCAATTTAGCCCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTACCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAACTAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAAGGGGTGTTACCGGCCGCGCTCGCGGCTAACCAAGTGGAGC
GCTGTTTGGTGGTGCCGCATAGTAATGGCGATCAGGCGGCTTTGGTCGGGGTTGAGCGGCATAAGTCGGCGCAAAGCTTA
CTCGAAGTGTGCGCGGACTTGTGTGGTCAGCAAACTCTATCTTTGTTTCAAAGTTCGCCCAGTGTGCAACAAGTGAGTCA
GACGCGCGATCTGCAAGACATCATAGGTCAGCAGCAGGGAAAACGAGCTTTGGAAATCGCTGCGGCTGGCAATCACAACC
TGCTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCGATGGAAACAGCCTCGATTGCCTCTCTCACGCAGCAAGAGATAAACCAACACAACTGGAAATTGCGCCCTTT
TCGTGCACCGCACCATTCAAGTTCAATGGCGGCTTTGGTTGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTCTCG
CCCATAATGGACTACTGTTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGCTTGATTCACTGCGTGAACCGCTGGAA
TCGGGTGAGATCGTGATTTCTCGCGCGCAGGGGAAAACCCGTTTTCCAGCACGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCTACGGGCTACTACGAAGGCAGTCAGGCCAGAGCCAATCCGCAGAGTATTTTGCGTTATTTGAGCCGGCTTTCAG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCAGCGTTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTCTAGAAAGCGCGCTGCATC
GCTTGGGTTTATCTATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCGATGGATCGCTTACTTAAACAGCTCAGTGCGCAGAACGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.803

100

0.998
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

67.258

100

0.673
  comM Glaesserella parasuis strain SC1401

64.147

100

0.653
  comM Legionella pneumophila str. Paris

51.008

97.83

0.499
  comM Legionella pneumophila strain ERS1305867

51.008

97.83

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.222

100

0.434

Multiple sequence alignment