Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CEQ48_RS09405 Genome accession   NZ_CP022353
Coordinates   816135..816446 (+) Length   103 a.a.
NCBI ID   WP_001166106.1    Uniprot ID   A0AAU8WU30
Organism   Vibrio tarriae strain 2521-89     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 811135..821446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS09390 (CEQ48_09390) lon 811171..813531 (+) 2361 WP_089071056.1 endopeptidase La -
  CEQ48_RS09395 (CEQ48_09395) - 813716..813988 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  CEQ48_RS09400 (CEQ48_09400) ppiD 814141..816000 (+) 1860 WP_089071057.1 peptidylprolyl isomerase -
  CEQ48_RS09405 (CEQ48_09405) comEA 816135..816446 (+) 312 WP_001166106.1 ComEA family DNA-binding protein Machinery gene
  CEQ48_RS09410 (CEQ48_09410) cmk 816629..817306 (+) 678 WP_000094752.1 (d)CMP kinase -
  CEQ48_RS09415 (CEQ48_09415) rpsA 817415..819085 (+) 1671 WP_089071058.1 30S ribosomal protein S1 -
  CEQ48_RS09420 (CEQ48_09420) ihfB 819374..819652 (+) 279 WP_000167341.1 integration host factor subunit beta -
  CEQ48_RS09425 (CEQ48_09425) - 819791..820072 (+) 282 WP_000691492.1 LapA family protein -
  CEQ48_RS09430 (CEQ48_09430) lapB 820084..821253 (+) 1170 WP_089071059.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10957.76 Da        Isoelectric Point: 4.7228

>NTDB_id=238628 CEQ48_RS09405 WP_001166106.1 816135..816446(+) (comEA) [Vibrio tarriae strain 2521-89]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTQI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=238628 CEQ48_RS09405 WP_001166106.1 816135..816446(+) (comEA) [Vibrio tarriae strain 2521-89]
ATGCAAATCAAAACGAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACAGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCTATTGTCGATTATCGGGAAGCCAACGGTCCTTTTACTCAAATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

99.029

100

0.99
  comEA Vibrio cholerae strain A1552

99.029

100

0.99
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437

Multiple sequence alignment