Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C9I78_RS01340 Genome accession   NZ_CP028141
Coordinates   266334..266864 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain R14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 261334..271864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I78_RS01330 (C9I78_01330) galU 264281..265153 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  C9I78_RS01335 (C9I78_01335) qstR 265411..266055 (-) 645 WP_108744711.1 LuxR C-terminal-related transcriptional regulator Regulator
  C9I78_RS01340 (C9I78_01340) ssb 266334..266864 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  C9I78_RS01345 (C9I78_01345) - 267050..268366 (+) 1317 WP_108744712.1 site-specific integrase -
  C9I78_RS01350 (C9I78_01350) - 268379..269932 (+) 1554 WP_108744713.1 site-specific integrase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=238398 C9I78_RS01340 WP_005466625.1 266334..266864(+) (ssb) [Vibrio parahaemolyticus strain R14]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=238398 C9I78_RS01340 WP_005466625.1 266334..266864(+) (ssb) [Vibrio parahaemolyticus strain R14]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAACAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment