Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   C9I78_RS01335 Genome accession   NZ_CP028141
Coordinates   265411..266055 (-) Length   214 a.a.
NCBI ID   WP_108744711.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain R14     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 260411..271055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I78_RS01325 (C9I78_01325) uvrA 261321..264143 (-) 2823 WP_108745155.1 excinuclease ABC subunit UvrA Machinery gene
  C9I78_RS01330 (C9I78_01330) galU 264281..265153 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  C9I78_RS01335 (C9I78_01335) qstR 265411..266055 (-) 645 WP_108744711.1 LuxR C-terminal-related transcriptional regulator Regulator
  C9I78_RS01340 (C9I78_01340) ssb 266334..266864 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  C9I78_RS01345 (C9I78_01345) - 267050..268366 (+) 1317 WP_108744712.1 site-specific integrase -
  C9I78_RS01350 (C9I78_01350) - 268379..269932 (+) 1554 WP_108744713.1 site-specific integrase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24387.19 Da        Isoelectric Point: 8.0617

>NTDB_id=238397 C9I78_RS01335 WP_108744711.1 265411..266055(-) (qstR) [Vibrio parahaemolyticus strain R14]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKDFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=238397 C9I78_RS01335 WP_108744711.1 265411..266055(-) (qstR) [Vibrio parahaemolyticus strain R14]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGGACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGCCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTATTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.093

100

0.523