Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   C5P47_RS08625 Genome accession   NZ_CP028140
Coordinates   1709221..1709817 (-) Length   198 a.a.
NCBI ID   WP_002982180.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS979     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1704221..1714817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5P47_RS08590 (C5P47_08575) - 1704281..1704586 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  C5P47_RS08595 (C5P47_08580) ruvX 1704598..1705017 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  C5P47_RS08600 (C5P47_08585) - 1705014..1705283 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  C5P47_RS08605 (C5P47_08590) spx 1705397..1705795 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  C5P47_RS08610 (C5P47_08595) recA 1706086..1707222 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  C5P47_RS08615 (C5P47_08600) cinA 1707311..1708582 (-) 1272 WP_032464622.1 competence/damage-inducible protein A Machinery gene
  C5P47_RS08620 (C5P47_08605) - 1708651..1709211 (-) 561 WP_011018314.1 DNA-3-methyladenine glycosylase I -
  C5P47_RS08625 (C5P47_08610) ruvA 1709221..1709817 (-) 597 WP_002982180.1 Holliday junction branch migration protein RuvA Machinery gene
  C5P47_RS08630 (C5P47_08615) - 1709819..1711039 (-) 1221 WP_032461237.1 MFS transporter -
  C5P47_RS08635 (C5P47_08620) hexB 1711050..1713032 (-) 1983 WP_110410884.1 DNA mismatch repair endonuclease MutL Machinery gene
  C5P47_RS08640 (C5P47_08625) - 1713127..1714272 (-) 1146 WP_110410860.1 site-specific integrase -
  C5P47_RS09355 (C5P47_08630) - 1714600..1714743 (+) 144 WP_110410861.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21829.16 Da        Isoelectric Point: 6.2537

>NTDB_id=238380 C5P47_RS08625 WP_002982180.1 1709221..1709817(-) (ruvA) [Streptococcus pyogenes strain NGAS979]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=238380 C5P47_RS08625 WP_002982180.1 1709221..1709817(-) (ruvA) [Streptococcus pyogenes strain NGAS979]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae R6

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae D39

66.497

99.495

0.662
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424

Multiple sequence alignment