Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CFH90_RS16435 Genome accession   NZ_CP022298
Coordinates   3337939..3339426 (+) Length   495 a.a.
NCBI ID   WP_126038667.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain IC001     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3332939..3344426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFH90_RS16410 (CFH90_16350) ribD 3333841..3334944 (-) 1104 WP_126038660.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CFH90_RS16415 (CFH90_16355) nrdR 3334959..3335417 (-) 459 WP_004692852.1 transcriptional regulator NrdR -
  CFH90_RS16420 (CFH90_16360) - 3335569..3336972 (-) 1404 WP_126038664.1 ammonium transporter -
  CFH90_RS16425 (CFH90_16365) glnK 3337032..3337370 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  CFH90_RS16430 (CFH90_16370) - 3337646..3337873 (+) 228 WP_004692854.1 accessory factor UbiK family protein -
  CFH90_RS16435 (CFH90_16375) comM 3337939..3339426 (+) 1488 WP_126038667.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CFH90_RS16440 (CFH90_16380) - 3339535..3340278 (-) 744 WP_004692873.1 TorF family putative porin -
  CFH90_RS16445 (CFH90_16385) - 3340625..3341395 (-) 771 WP_126038670.1 TorF family putative porin -
  CFH90_RS16450 (CFH90_16390) - 3341855..3343180 (+) 1326 WP_126038673.1 OprD family outer membrane porin -
  CFH90_RS16455 (CFH90_16395) ppa 3343283..3343810 (-) 528 WP_126038676.1 inorganic diphosphatase -
  CFH90_RS16460 (CFH90_16400) - 3343929..3344333 (-) 405 WP_005401007.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54426.28 Da        Isoelectric Point: 8.0112

>NTDB_id=238216 CFH90_RS16435 WP_126038667.1 3337939..3339426(+) (comM) [Acinetobacter johnsonii strain IC001]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQAVE
DSATVRERVIQAYQWQMQRQACLNMALSPKQLEQFAPLNEQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEQIQ
TGHLTEALSYRGQHH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=238216 CFH90_RS16435 WP_126038667.1 3337939..3339426(+) (comM) [Acinetobacter johnsonii strain IC001]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACCAAACGCCTCACCATCAACCTTGCGCCCGCAGATCTGCCCAAAGACAGCTCACGA
CTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCCGAACAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTACTTTAAGTATTGCGATTGCCTGCCAGCAAGCTGGAC
ATCAACTGATTTTACCTGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAATTTTCAAGTATTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAACCCACGGCGCTAAAAGCCTCCCAACATTA
CAAATTTGATTTGGCCGATGTTAAAGGTCAACTACGTCCAAGACGCGCCTTAGAGATTGCGGCAGCAGGTGGTCATTCTT
TGCTATTTAAAGGACCGCCAGGAACAGGGAAAACCCTATTGGCTTCACGTTTAGCCAGTATTTTACCGCCCTTGAATACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGGCAGCGGCCATTTCGTGCACC
GCACCATACAGCTTCTGCGGTTGCCTTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAGGTTTTAGAGGTTTTAAGACAGCCGATAGAAGCCAAAGAG
ATTGTGATTTCGCGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTGATTGCTGCAATGAATCCGTGTCCCTG
TGGTTATGCTTTTAATCAAGATAGCCGTTGCCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGCATTTCAGGGC
CTTTGCTGGATCGAATTGATTTACATATTGATGTACCACCCTTGCATGCTTCTGAATTGCAAGACACACAAGCCGTGGAA
GACTCGGCAACTGTACGTGAACGCGTGATTCAAGCTTATCAATGGCAAATGCAACGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTGGAACAGTTTGCGCCACTCAATGAACAAGCCGCGCTGATCTTTGAAAAGGCACAACAGCGCTTAA
ACTTATCTGCTCGGGGGTATCACCGTATTTTAAGAGTGGCCAGAACCATTGCCGACTTAGCGCAGTCTGAACAGATTCAA
ACAGGCCACTTAACCGAAGCCCTGTCTTATCGTGGGCAACATCACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.904

100

0.523
  comM Glaesserella parasuis strain SC1401

51.102

100

0.515
  comM Vibrio cholerae strain A1552

51.107

100

0.513
  comM Vibrio campbellii strain DS40M4

51.313

100

0.513
  comM Legionella pneumophila str. Paris

50.4

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.4

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.743

100

0.467

Multiple sequence alignment