Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   BG910_RS11990 Genome accession   NZ_CP022278
Coordinates   2485962..2486267 (-) Length   101 a.a.
NCBI ID   WP_089035781.1    Uniprot ID   -
Organism   Neisseria chenwenguii strain 10023     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2480962..2491267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS11965 (BG910_11955) - 2481259..2481924 (+) 666 WP_089037045.1 alpha/beta hydrolase -
  BG910_RS11970 (BG910_11960) ttcA 2482105..2483058 (+) 954 WP_089037046.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  BG910_RS11975 (BG910_11965) - 2483188..2483670 (+) 483 WP_089037047.1 DUF456 domain-containing protein -
  BG910_RS11980 (BG910_11970) - 2483995..2485158 (+) 1164 WP_089037048.1 nitronate monooxygenase family protein -
  BG910_RS11985 (BG910_11975) comP 2485281..2485751 (-) 471 WP_089035780.1 type IV pilin protein Machinery gene
  BG910_RS11990 (BG910_11980) comE 2485962..2486267 (-) 306 WP_089035781.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 10266.15 Da        Isoelectric Point: 10.6985

>NTDB_id=237869 BG910_RS11990 WP_089035781.1 2485962..2486267(-) (comE) [Neisseria chenwenguii strain 10023]
MKKFIFAAVAALGTALSLAAVNINTAGEAELETLPGVGPAKAKAIVAYRSQHGQFKSVDELKNVKGIGEGIFAKLKAEVA
VGGAPAKKAAVPAVKQPVVKK

Nucleotide


Download         Length: 306 bp        

>NTDB_id=237869 BG910_RS11990 WP_089035781.1 2485962..2486267(-) (comE) [Neisseria chenwenguii strain 10023]
ATGAAAAAATTCATTTTTGCTGCGGTAGCGGCATTGGGTACAGCGCTGTCGCTGGCGGCAGTCAACATCAATACTGCGGG
TGAGGCCGAGCTGGAAACGCTGCCGGGTGTGGGTCCGGCCAAAGCGAAGGCGATTGTGGCCTACCGTAGTCAGCACGGAC
AGTTTAAGAGTGTGGACGAGCTGAAGAACGTCAAAGGCATCGGCGAAGGCATTTTTGCGAAGCTGAAGGCCGAGGTGGCG
GTTGGCGGTGCGCCTGCGAAGAAGGCAGCCGTACCGGCAGTGAAACAGCCGGTGGTGAAGAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.383

80.198

0.396
  comEA Vibrio parahaemolyticus RIMD 2210633

43.023

85.149

0.366

Multiple sequence alignment