Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   BG910_RS11985 Genome accession   NZ_CP022278
Coordinates   2485281..2485751 (-) Length   156 a.a.
NCBI ID   WP_089035780.1    Uniprot ID   A0A220S0X1
Organism   Neisseria chenwenguii strain 10023     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2480281..2490751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS11960 (BG910_11950) lgt 2480336..2481190 (+) 855 WP_089037044.1 prolipoprotein diacylglyceryl transferase -
  BG910_RS11965 (BG910_11955) - 2481259..2481924 (+) 666 WP_089037045.1 alpha/beta hydrolase -
  BG910_RS11970 (BG910_11960) ttcA 2482105..2483058 (+) 954 WP_089037046.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  BG910_RS11975 (BG910_11965) - 2483188..2483670 (+) 483 WP_089037047.1 DUF456 domain-containing protein -
  BG910_RS11980 (BG910_11970) - 2483995..2485158 (+) 1164 WP_089037048.1 nitronate monooxygenase family protein -
  BG910_RS11985 (BG910_11975) comP 2485281..2485751 (-) 471 WP_089035780.1 type IV pilin protein Machinery gene
  BG910_RS11990 (BG910_11980) comE 2485962..2486267 (-) 306 WP_089035781.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16997.52 Da        Isoelectric Point: 9.8043

>NTDB_id=237868 BG910_RS11985 WP_089035780.1 2485281..2485751(-) (comP) [Neisseria chenwenguii strain 10023]
MKQIHPQTRLSGFTLTELLVTLAITGILATVAYPLYRDHVRAANLRAAHAALLENAQFMERFYAQRGSFKANSTTWPELP
VKEAGGFCIRLNGNPRGARADKFMLKAVAKDHEGEPRVLKLDGGLSAVLCGRSDSRCTDGKAYFGGGGDKECRPFG

Nucleotide


Download         Length: 471 bp        

>NTDB_id=237868 BG910_RS11985 WP_089035780.1 2485281..2485751(-) (comP) [Neisseria chenwenguii strain 10023]
ATGAAACAGATTCATCCGCAAACACGGCTTTCCGGCTTTACCTTGACGGAACTGTTGGTCACGCTGGCCATTACCGGCAT
TTTGGCGACGGTTGCCTATCCGCTCTATCGGGATCATGTCCGTGCTGCGAATCTGCGGGCTGCCCATGCGGCGCTGTTGG
AGAATGCGCAGTTTATGGAGCGGTTTTATGCGCAGCGGGGGAGTTTTAAGGCGAATTCGACGACCTGGCCGGAGTTGCCG
GTTAAGGAGGCGGGCGGATTCTGTATCCGTTTAAACGGAAATCCGCGTGGGGCGCGGGCGGATAAGTTTATGCTGAAGGC
GGTGGCGAAGGATCATGAGGGCGAACCGCGGGTGCTGAAGCTGGACGGGGGTTTGTCGGCGGTGTTGTGCGGGCGTTCGG
ACAGCCGGTGTACGGACGGGAAGGCGTATTTCGGCGGGGGCGGGGATAAGGAGTGCCGGCCTTTCGGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-112)

Prokaryotic N-terminal methylation motif (N_methyl)

(11-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220S0X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

60.959

93.59

0.571
  comP Neisseria meningitidis 8013

53.472

92.308

0.494
  comP Neisseria gonorrhoeae MS11

53.521

91.026

0.487

Multiple sequence alignment