Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   BG910_RS07725 Genome accession   NZ_CP022278
Coordinates   1564315..1564620 (+) Length   101 a.a.
NCBI ID   WP_089035781.1    Uniprot ID   -
Organism   Neisseria chenwenguii strain 10023     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559315..1569620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS07725 (BG910_07715) comE 1564315..1564620 (+) 306 WP_089035781.1 helix-hairpin-helix domain-containing protein Machinery gene
  BG910_RS07730 (BG910_07720) comP 1564831..1565301 (+) 471 WP_089035780.1 type IV pilin protein Machinery gene
  BG910_RS07735 (BG910_07725) tyrS 1565498..1566793 (-) 1296 WP_089036342.1 tyrosine--tRNA ligase -
  BG910_RS12320 - 1567586..1567891 (-) 306 WP_123805964.1 hypothetical protein -
  BG910_RS12325 - 1567952..1568302 (-) 351 WP_123805963.1 hypothetical protein -
  BG910_RS07745 (BG910_07735) ychF 1568474..1569565 (-) 1092 WP_089036344.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 10266.15 Da        Isoelectric Point: 10.6985

>NTDB_id=237856 BG910_RS07725 WP_089035781.1 1564315..1564620(+) (comE) [Neisseria chenwenguii strain 10023]
MKKFIFAAVAALGTALSLAAVNINTAGEAELETLPGVGPAKAKAIVAYRSQHGQFKSVDELKNVKGIGEGIFAKLKAEVA
VGGAPAKKAAVPAVKQPVVKK

Nucleotide


Download         Length: 306 bp        

>NTDB_id=237856 BG910_RS07725 WP_089035781.1 1564315..1564620(+) (comE) [Neisseria chenwenguii strain 10023]
ATGAAAAAATTCATTTTTGCTGCGGTAGCGGCATTGGGTACAGCGCTGTCGCTGGCGGCAGTCAACATCAATACTGCGGG
TGAGGCCGAGCTGGAAACGCTGCCGGGTGTGGGTCCGGCCAAAGCGAAGGCGATTGTGGCCTACCGTAGTCAGCACGGAC
AGTTTAAGAGTGTGGACGAGCTGAAGAACGTCAAAGGCATCGGCGAAGGCATTTTTGCGAAGCTGAAGGCCGAGGTGGCG
GTTGGCGGTGCGCCTGCGAAGAAGGCAGCCGTACCGGCAGTGAAACAGCCGGTGGTGAAGAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.383

80.198

0.396
  comEA Vibrio parahaemolyticus RIMD 2210633

43.023

85.149

0.366

Multiple sequence alignment