Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   BG910_RS07730 Genome accession   NZ_CP022278
Coordinates   1564831..1565301 (+) Length   156 a.a.
NCBI ID   WP_089035780.1    Uniprot ID   A0A220S0X1
Organism   Neisseria chenwenguii strain 10023     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559831..1570301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS07725 (BG910_07715) comE 1564315..1564620 (+) 306 WP_089035781.1 helix-hairpin-helix domain-containing protein Machinery gene
  BG910_RS07730 (BG910_07720) comP 1564831..1565301 (+) 471 WP_089035780.1 type IV pilin protein Machinery gene
  BG910_RS07735 (BG910_07725) tyrS 1565498..1566793 (-) 1296 WP_089036342.1 tyrosine--tRNA ligase -
  BG910_RS12320 - 1567586..1567891 (-) 306 WP_123805964.1 hypothetical protein -
  BG910_RS12325 - 1567952..1568302 (-) 351 WP_123805963.1 hypothetical protein -
  BG910_RS07745 (BG910_07735) ychF 1568474..1569565 (-) 1092 WP_089036344.1 redox-regulated ATPase YchF -
  BG910_RS07750 (BG910_07740) - 1569677..1570108 (-) 432 WP_089037189.1 EamA family transporter -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16997.52 Da        Isoelectric Point: 9.8043

>NTDB_id=237857 BG910_RS07730 WP_089035780.1 1564831..1565301(+) (comP) [Neisseria chenwenguii strain 10023]
MKQIHPQTRLSGFTLTELLVTLAITGILATVAYPLYRDHVRAANLRAAHAALLENAQFMERFYAQRGSFKANSTTWPELP
VKEAGGFCIRLNGNPRGARADKFMLKAVAKDHEGEPRVLKLDGGLSAVLCGRSDSRCTDGKAYFGGGGDKECRPFG

Nucleotide


Download         Length: 471 bp        

>NTDB_id=237857 BG910_RS07730 WP_089035780.1 1564831..1565301(+) (comP) [Neisseria chenwenguii strain 10023]
ATGAAACAGATTCATCCGCAAACACGGCTTTCCGGCTTTACCTTGACGGAACTGTTGGTCACGCTGGCCATTACCGGCAT
TTTGGCGACGGTTGCCTATCCGCTCTATCGGGATCATGTCCGTGCTGCGAATCTGCGGGCTGCCCATGCGGCGCTGTTGG
AGAATGCGCAGTTTATGGAGCGGTTTTATGCGCAGCGGGGGAGTTTTAAGGCGAATTCGACGACCTGGCCGGAGTTGCCG
GTTAAGGAGGCGGGCGGATTCTGTATCCGTTTAAACGGAAATCCGCGTGGGGCGCGGGCGGATAAGTTTATGCTGAAGGC
GGTGGCGAAGGATCATGAGGGCGAACCGCGGGTGCTGAAGCTGGACGGGGGTTTGTCGGCGGTGTTGTGCGGGCGTTCGG
ACAGCCGGTGTACGGACGGGAAGGCGTATTTCGGCGGGGGCGGGGATAAGGAGTGCCGGCCTTTCGGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-112)

Prokaryotic N-terminal methylation motif (N_methyl)

(11-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220S0X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

60.959

93.59

0.571
  comP Neisseria meningitidis 8013

53.472

92.308

0.494
  comP Neisseria gonorrhoeae MS11

53.521

91.026

0.487

Multiple sequence alignment